Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01765 ATGACTTCTTTTCTTCCTGCCACAACAGAGTCAATTTCTCTGGCACTGGAAGCCGAAGACCCATCTGAAAGAATATCCATTCTTTATCGGGTACTTGATGATCCTTCTTCTTCTCCAGATGCTCTGCGCATGAAAGAGCAGGCCATCACAAACCTCACTGAGCAGCTCATGGAAGAGAATAGGGCAGAGGATCTGCGCAGCCTTCTTACTCAGTTGAGGCCCTTCTTTTCCTTGATTCCTAAGGCAAAAACTGCAAAGATTGTGAGGGGCATAATTGATTCTGTTGCTAAAATACCAGGGACTTCTGATCTACAAATTACACTCTGCAAAGAAATGGTGCAATGGACTCGTGCTGAAAAACGTACCTTTCTGAGGCAACGAGTTGAGGCAAGACTTGCAGCACTACTGATGGAAAATAAGGAGTATTCTGAAGCATTGACTCTTCTTAATGGCCTGGTCAAAGAGGTTAGAAGACTAGATGATAAGCTTCTTCTTGTAGACATAGACTTGCTTGAAAGCAAGCTACACTTTTCCTTAAGAAACCTTCCAAAGGCAAAAGCTGCCTTGACAGCTGCAAGAACAGCTGCAAATGCAATTTATGTTCCTCCAGCTCAACAAGGGGCCATAGATTTGCAGAGTGGGATTCTTCATGCTGAGGAGAAGGATTACAAAACTGCATATAGTTATTTCTTTGAAGCTTTTGAGTCTTTCAATGCTCTTGACGACCCCAAAGCGGTATTTAGCCTGAAATACATGCTGTTGTGTAAGATCATGGTGAGTCAAGCTGATGATGTGGCTGGAATTATATCTTCTAAAGCTGGCCTGCAATATCTTGGCCCCGACTTGGATGCCATGAAAGCAGTTGCAGATGCTCATTCTAAGCGATCTCTGAATTTATTTGAAATCGCTTTGCGAGATTATAAGGCTCAGTTGGAGGAAGACCCAATTGTCCACAGGCACCTTTCATCCCTGTATGATACTCTCCTGGAGCAGAACCTTTGCAGATTGATTGAACCTTTCTCAAGGGTTGAGATTGCACACATTTCTGAACTAATTGAGCTTCCTGTTGATCATGTGGAACGAAAGTTGTCTCAGATGATTTTGGACAAGAAGTTTGCGGGGACATTGGATCAAGGAGCTGGATGCCTTGTCATATTTGATGATCCCAAAACGGATGCAATATTCCCTGCAACCTTAGAAACCATTTCTAATACTGGGAAAGTCGTGGACAGTCTTTATGCTAGGTCTGCCAAGATAATTGCATGA 1266 0.4313 MTSFLPATTESISLALEAEDPSERISILYRVLDDPSSSPDALRMKEQAITNLTEQLMEENRAEDLRSLLTQLRPFFSLIPKAKTAKIVRGIIDSVAKIPGTSDLQITLCKEMVQWTRAEKRTFLRQRVEARLAALLMENKEYSEALTLLNGLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNALDDPKAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYLGPDLDAMKAVADAHSKRSLNLFEIALRDYKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPFSRVEIAHISELIELPVDHVERKLSQMILDKKFAGTLDQGAGCLVIFDDPKTDAIFPATLETISNTGKVVDSLYARSAKIIA 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01765 421 Coils Coil 125 145 - -
Spst8g01765 421 Pfam 26S proteasome regulatory subunit RPN6 N-terminal domain 16 127 IPR040773 -
Spst8g01765 421 SUPERFAMILY "Winged helix" DNA-binding domain 313 393 IPR036390 -
Spst8g01765 421 SUPERFAMILY TPR-like 128 322 IPR011990 GO:0005515
Spst8g01765 421 ProSiteProfiles PCI domain profile. 222 390 IPR000717 -
Spst8g01765 421 Gene3D - 45 420 - -
Spst8g01765 421 SMART PCI/PINT associated module 142 318 - -
Spst8g01765 421 Pfam 26S proteasome subunit RPN6 C-terminal helix domain 392 417 IPR040780 -
Spst8g01765 421 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 319 402 IPR000717 -
Spst8g01765 421 FunFam 26S proteasome non-ATPase regulatory subunit 11 45 420 - -
Spst8g01765 421 Pfam PCI domain 284 385 IPR000717 -
Spst8g01765 421 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 39 417 - -
Spst8g01765 421 Coils Coil 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01765 Spst-Chr8 21241491 21242756 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01765 K03036 - gmx:100780845 734.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00905 9 7916230 7917552 Spst8g01765 8 21241491 21242756 PCT