Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00864 ATGTGCATAACTAATGAGAGGACCGAAAAGGTTTCAATTGTGATGGAGTTCATAGAGGTTTTGTTTTTCTCCTCTCTGTCTCTCAGAATGAGTAGACCAACAACACGAAGTAAAAATAAAAGACAGAGACAAGGGGATGATGACAACGGCACTGGTGAAATATGGAGGAAAATTCACAATACTGGTGTGGTAACTGAGGATGATATGAATCATTTGTATATGATTTGGAAGCCAGTTTGTTCAGGTTGTCGGGTCAATAGCAAAGACAACCCAAATTGCTTCTGTGCCTTGGTTCCACCTCAAAATGGAGCCCGAAAGTCGGGCTTATGGCAAAAGATGTCTGATTTTGTTGAAAGTCTTGGTCATGATCCAACCAAGGATCTTCGGGCATCTGCTAATTCTCCTGCAGGTCTCACAAATCTTGGTGCAACATGCTATGCCAACAGTATACTTCAGTGCTTGTATATGAATAAATCTTTTCGAGAAGGCATATTTTCTGTAGAACAAGATGTTTTACAACAACAGCCTGTGCTGGATCAGCTTGCTCGACTTTTTGTTCAGTTGCATATTAGCAAAATGGCTTTCATAGATTCTTCTCCATTCGTAAAAACACTGGAATTAGATAATGGAGTGCAGCAGGATAGCCATGAGTTCTTAACATTGCTTCTCTCTTTACTTGAGCGTTGTCTAAGCCATTCCAAAGTGCCCAAGGCAAGAACGATAGTTCAAGATCTTTTCCGGGGAAGTGTGTCTCATGTGACAACATGCTCACAATGTGGAAGAGACTCTGAGGCTTCTTCGAAAATGGAAGATTTCTATGAATTGGAGTTGAATGTCAAGGGATTGAAAAGTTTAGATGAGAGCCTAGATGATTATCTAACTGTTGAAGTGCTAAATGGAGACAATCAATATCTTTGTGAGTCATGTAAAAGAAGAGTTGATGCTACTCGCAGCATCAAATTGTGTACATTACCCAAAGTGCTTAATTTTCAACTCAAACGATATGTCTTTCTTCCCAAGACTACAACGAAGAAGAAAATTACTTCTGCCTTTTCATTTCCTGCTGAACTTGATATGCGACCTAGAATGTCTGAGTTGTCTCAGTTTGACTTGGTGTATGACTTGTCAGCTGTACTGATTCACAAAGGAACTGGTGCTAATAGTGGCCATTACATTGCTCATATTAAGGATGTAAACACTGGGCAGTGGTGGGAATTTGATGATGAGCATGTTACTAATTTGGGTTGTCATCCATTTGGCGAAGGGTCATCAAATTCTACTTCTAAATCCATCAAGACTGATGCAATTAATTCTGGTAGTTCTCAAGCAATGATAGCTGACAGTAATGGAAATGGTTTGAATGCCTCTCATTCCCAATCTTCACTTTCAGAGACATTTTTGTCTAGTGATGCGTACATGTTGATGTACCATCTTAAACATACAGAAAATGTAGGTGAAAGTGCAGGTGTAATTTGTGGTGCTAACCATAAAGAAAAAGAGGGTGCTGTAGTTGCTTTGCAAAATGGTGCTTCTCATCCATTTGATCTTTATGATGAGATTCAAAATTTCAATGCTTCATATGAAGATGCTTGTCAGCACTACACTAACAGGAAAGAATTTGAATTGGGTCGTATTAATGGGAGGAGACAGGAAGTTCGATCTGTTTTAGCTGAAGCTCCTGTTCAACCATTGGAGCAACCATTTTATTGGATTTCGAGTGAATGGCTTCGCCAGTGGGCCGACACCATTGTTCCAACTCCACTTGACAACTCGTCTGTCCAATGCTCACATGGGAAAGTTCCAGTTTCAAAAGTTACCTCAATGAAGCGATTGTCTGCAAAAGCATGGGATACCTTGTTCTCCAAGTATGGTGGGGGGCCAGCATTGTCTCATGATAACCACTGTTTGGATTGCCTGATTCATGGGGCAATGACAGTGGTTTCAGCTGATACCTATCGGGATAGAAGAGAATCAATGAAGTCACTTGCACGGGATATTCTAGATGGGAACTGCTTGGATGGAAAGTATTACATATCCAGACCATGGTTGCAGCAATGGTGGAAAAGAAAAGTCCTTGATGCTCCATCTGAAGCTGATGCTGGACCAACAGCAGCCATTAGTTGTCCACATGATCAATTGATGCCTGAGCAAGCTCCTGGTGCTAAGCGGGTGCTTATTCCTGAGTCTTTTTGGCTCTTCTTATACGAAGATGCTGTTTCTGTAAAGCCAGATAATCCTTTGGGTGGCCCAACCTTTTCTTCAGACTCTGAACAGTGTTCCCAATGCAGTAATGAATTATCAGAAGTAGCATGCTTGGAGGACTCCTTGAGATTAGTTAAACAAAAGCAACGTCAAAATCATGAGAAATTATTCCAGGCTAAAAGTATGCCACTTTCTCCACACTGCAAGTATTTCTTGGTGCCTTCATCGTGGATTTCAAAATGGAGAAATTACATCAATCCAACACTGAAGAATTCAGATAAACCTGAAACTTTAGATGGGGTAATTGATTCATTGCTATGTGAAAAGCACTCTCTCCTTCTTGAAAGACCTCCTGAATTGGTTTCCAGACGTGGTGCTATAATCCAGAGGGAGTCTTCTGTAGGAAGCTTAACTATTGTATCTGAGAATGATTGGAAATGCTTCTGTGAAGAATGGGGCGGTAGTGAGACTAAAGTAATATCTGCGACAATTGATCATGTTAATGATCCAAACATGTTGACTGGAACCAGTGAAGAGATGCTAATATGTAAGGATCAGTTGGGCACAGCAGATAAAATGAATTCTGAAAATGGGACTGGACAAATTTTAATCAAGACTTGTCCTGAGGTTTGTGAAAGTTGCATTGGAGAAAGAGAGAGCTGTGAGCTAATGCAGAAGCTTAACTATTGCAATGAGGACATATGTGTGATTCTTGTTCGTGGTAAGGAGGTACCAAGATCAATTTTGGAGGCTTCAAAGGGATTTGTTGAAGCAGATAGGCGAGTTTCCAAGCGTTCACGCAAAACTAAAAACGGGAGTTCAATTTGTCTAAAAGTTTCTGCTTCAACATCTTTATATCAGCTGAAAATGATGATATGGGAATCCTTTGGGGTTGTCAAGGAAAACCAGATACTACATAAAGGGGATAGGATAATTGATAGTGATAATGAATGTGCTACCCTCGCGGATTTGAACATTTTTGCCGGAGATCAGATTATAGTGAGAGACTCTGAGATCCATGAAAACCGAGATATTGCTGACGAGCTTTGCGATGATAAAACGGATCTGCAGCATACCGAGGAAGGGTTCCGTGGAACACTACTTACTGCAAATGTTTCATCCCAGGTTGTTTAA 3336 0.4062 MCITNERTEKVSIVMEFIEVLFFSSLSLRMSRPTTRSKNKRQRQGDDDNGTGEIWRKIHNTGVVTEDDMNHLYMIWKPVCSGCRVNSKDNPNCFCALVPPQNGARKSGLWQKMSDFVESLGHDPTKDLRASANSPAGLTNLGATCYANSILQCLYMNKSFREGIFSVEQDVLQQQPVLDQLARLFVQLHISKMAFIDSSPFVKTLELDNGVQQDSHEFLTLLLSLLERCLSHSKVPKARTIVQDLFRGSVSHVTTCSQCGRDSEASSKMEDFYELELNVKGLKSLDESLDDYLTVEVLNGDNQYLCESCKRRVDATRSIKLCTLPKVLNFQLKRYVFLPKTTTKKKITSAFSFPAELDMRPRMSELSQFDLVYDLSAVLIHKGTGANSGHYIAHIKDVNTGQWWEFDDEHVTNLGCHPFGEGSSNSTSKSIKTDAINSGSSQAMIADSNGNGLNASHSQSSLSETFLSSDAYMLMYHLKHTENVGESAGVICGANHKEKEGAVVALQNGASHPFDLYDEIQNFNASYEDACQHYTNRKEFELGRINGRRQEVRSVLAEAPVQPLEQPFYWISSEWLRQWADTIVPTPLDNSSVQCSHGKVPVSKVTSMKRLSAKAWDTLFSKYGGGPALSHDNHCLDCLIHGAMTVVSADTYRDRRESMKSLARDILDGNCLDGKYYISRPWLQQWWKRKVLDAPSEADAGPTAAISCPHDQLMPEQAPGAKRVLIPESFWLFLYEDAVSVKPDNPLGGPTFSSDSEQCSQCSNELSEVACLEDSLRLVKQKQRQNHEKLFQAKSMPLSPHCKYFLVPSSWISKWRNYINPTLKNSDKPETLDGVIDSLLCEKHSLLLERPPELVSRRGAIIQRESSVGSLTIVSENDWKCFCEEWGGSETKVISATIDHVNDPNMLTGTSEEMLICKDQLGTADKMNSENGTGQILIKTCPEVCESCIGERESCELMQKLNYCNEDICVILVRGKEVPRSILEASKGFVEADRRVSKRSRKTKNGSSICLKVSASTSLYQLKMMIWESFGVVKENQILHKGDRIIDSDNECATLADLNIFAGDQIIVRDSEIHENRDIADELCDDKTDLQHTEEGFRGTLLTANVSSQVV 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00864 1111 Gene3D - 537 635 IPR035927 -
Spst9g00864 1111 Gene3D - 774 895 IPR035927 -
Spst9g00864 1111 CDD Ubl_USP48 994 1102 IPR044743 GO:0004197|GO:0004843|GO:0016579
Spst9g00864 1111 SMART dusp 561 632 IPR006615 GO:0004843
Spst9g00864 1111 FunFam Ubiquitin carboxyl-terminal hydrolase 26 534 632 - -
Spst9g00864 1111 Gene3D Cysteine proteinases 119 479 - -
Spst9g00864 1111 ProSiteProfiles DUSP domain profile. 650 757 IPR006615 GO:0004843
Spst9g00864 1111 Pfam Ubiquitin carboxyl-terminal hydrolase 137 476 IPR001394 GO:0004843|GO:0016579
Spst9g00864 1111 FunFam ubiquitin carboxyl-terminal hydrolase 48 123 479 - -
Spst9g00864 1111 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 137 152 IPR018200 GO:0004843|GO:0006511
Spst9g00864 1111 ProSiteProfiles DUSP domain profile. 543 635 IPR006615 GO:0004843
Spst9g00864 1111 SUPERFAMILY Cysteine proteinases 134 476 IPR038765 -
Spst9g00864 1111 SUPERFAMILY Ubiquitin-like 1002 1071 IPR029071 -
Spst9g00864 1111 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 373 391 IPR018200 GO:0004843|GO:0006511
Spst9g00864 1111 SUPERFAMILY DUSP-like 551 635 IPR035927 -
Spst9g00864 1111 MobiDBLite consensus disorder prediction 39 53 - -
Spst9g00864 1111 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 62 477 - -
Spst9g00864 1111 MobiDBLite consensus disorder prediction 33 53 - -
Spst9g00864 1111 ProSiteProfiles DUSP domain profile. 778 898 IPR006615 GO:0004843
Spst9g00864 1111 CDD Peptidase_C19L 137 476 IPR033841 GO:0004843
Spst9g00864 1111 Gene3D - 1000 1071 - -
Spst9g00864 1111 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 136 479 IPR028889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00864 Spst-Chr9 7581193 7592982 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00864 134 468 Miscellaneous Gene Families AT2G24640 28.342 2.75e-27 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00864 - - gmx:100815770 1983.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00864 9 7581193 7592982 Spst9g00864 9 7581193 7592982 ECH
Spst8g01642 8 19090157 19101453 Spst9g00864 9 7581193 7592982 PCT