Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01642 ATGTCTTGCCCTTTGTTTCAGGTCAAGGACCAACCATTAAGGATTATAATATGGAGATGTGATGGTCTTTTAAGCGCATATCAGCTGAAAATTCACAAAACGGGTGCAGTGACTGAAGACGATATGAGCCAACTGTATATGATTTGGAAGCCAGTCTGTTCAGGCTGTCGTGTTAATACTAAAGACAACCCAAATTGTTTCTGTGCATTGGTTCCACCTCCAAATGGTACCCGGAAGGCTGGCCTATGGCAGAAGATGTCTGACTTTGTTGAAAGTCTAGGTCCTGATCCAACTTTGGATCTTCGTGCTTCTGATAGTTATCCTGCAGGTCTGACCAATCTTGGTGCAACATGCTATGCCAACAGTATACTACAGTGCTTGTACATGAATAAATCTTTCCGAGAAGGCATATTTTCTGTAGAACCTGATCTTTTACAAAAACAACCAGTGTTGGGTCAATTGATTCGACTTTTTGTACAGTTGCATGCTAGTAAAATGGCTTTCGTAGATTCTTCTCCATTTGTTAAGACACTGGAGTTAGACAATAGAGTTCAGCAGGATAGCCATGAGTTTATGACATTGCTTTTGTCATTACTTGAGGGTTGTTTGAGCCATTCCAAAATTGCTAAGGCAAGAACAACAGTTCAAGATCTTTTCCGAGGAAGCATGTTTCATGTGACAACTTTTTGGCATGTTCCCAACACGGCCTTTCTTGAAGTGTCTGTGCTTCATAGATGTGCGCAATGTGGAAGAGAATCTGAATCTTCTTCAAAAATGGAAGACTTTTATGGGTTAGAGTTGAATATTAAGGGACTAAAAGGTTTAGATGAAAGTCTAGATGATTACCTCGCAATTGAAGAGCTTCATGGAGACAATCAATATTTTTGTGGGTCATGTAAAACAAGAGTTGATGCTACTCGCAGCATCAAGCTGTGTACATTACCTGATGTACTTAATTTTCAACTTAAACGTTATGTCTTCCTTCCACAGAATACAACGAAGAAGAAAGTTACTTCTGCATTTTCATTTCCTGCTGAACTTGATATGCACCGGAGATTGTCTGAGCCGTCTCAGTTTGAATTGATATATGACTTGTCAGCTGTACTGATTCACAAAGGAACTGCTGTTAATAGTGGTCACTACATCGCCCATATCAAGGATGAAAACACTGGACAATGGTGGGAATTTGATGATGAGCAGGTTACTAATTTAGGTTTCCATCCATTCGGTGAAACAGCTTCATCTTCAACTTCTAAATCTGTTAAGACAGATGCTTCTAATTGCTCTGAAGCAATTCTAACTGACAGTAATGGTTTAGATGCTCCTCATTCACAATCTTCACTTCAGGAGACATTTTCATCAAGTGATGCATACTTGCTGATGTACCATCTTAAGCATAACAAAAATGTTGGTGAAAACATGGACACTGCTTATGGTGTTAACATTAAAGAAGTAGAGGGAAATGAAATTACTGCACAAGACAGTCCTTTTGTCCCTTCTCATCTTTGTGATGAGATTCAAAATTTTAATGCCTCGTATCTCGATTCTTGCGAGCATTACAAATATAGGAAAAATTTAGAATTGAGTTGTATCAATGAGAGGAGACAGGAAGTTCGATCTGTTTTAGCAGAAGCTCCTACACAACCACGAGAGCAACCGTACTTTTGGATCTGTAGTGACTGGCTTCGCCAGTGGGCTGACAGCAACATTCCAGCTGCTCTTGACAATACATCTATCCAATGCTCACATGGAAAAGTTCCAGTGTTTAAGGTTACTTCAATGAAGCGGTTATCTGCTAAAGCTTGGAATATCTTATTGTCTAAGTACGGTGGGGGACCAACTCTTTCTCATGATGACTGCTGTTGGGATTGTCTGATTGATGGGGCTCAGAATGTGGTGTCAGCTGACACCTATCGCGATCAAAGAGAATCATTGAAGCAATTAGCACGGGCTATTCTTGATGGAAATTATAAAGATGGAATGTACTATGTTTCTAGACCATGGTTGCAGCAATGGTGGAAAAGAAAAGTTGTTGATGCTCCATCTGAAGCTGATGCTGGACCAACAACATCCATTACTTGTCCACATGGCCAACTTATGCCTGTGCAAGCTGTTGGTGCCAAGCGGTTGCTTGTTCCTGAGTGTTTCTGGCTTTTCTTATATAAAGATGCCATTTCAGTAAAACCTGATGATCCTCTAGGTTGTCCTACTTTTCCTTTAGATTCCAGGGAGTGTTGCCAATGCAGTGATGAAATATCTAATGAGGCTTGCTTTGAGGACTCTTTGAGATTAGTCAAACAAATGCAACGCCAAAATCATGAGAAATTATTTGTTGGCAAAAGTATGCCACTCTCTCTACATTGCAAGTATTTCTTAGTTCCTTCCTCTTGGATTTCAAAATGGAGAAATTTCGTTAATTTCGCTGTGAAGAATTCAGATAAACCTGAAACTTTAGATGGAGTAATTGATTCACTGATGTGTGAGAAGCACTCACGGCTTGTAGAAAGGCCTCCTGAACTGATTTACAGACGCAGTGCTATAATTTCAAGAGAATCTTCTGTAGGTGGCTTAACCATCGTATCAGAGAATGATTGGAAGTGCTTCTGTGAAGAATGGAGTGGTATTGAGACCAAAGGAATATCTGCAAGAATTGAGAAGGTCAATGATTTAGAGAATGCTTTGAATGGATCCTGCAAAGAGATGCCTATCTGTGAGGATAAGCTTGATACTTGGGATAATGTGAATAATGAAAGTTATATAGGAGTGAATGAACAACTTGTGATTAAGACGTATCCTGAGAAAACCCCTTAA 2811 0.3974 MSCPLFQVKDQPLRIIIWRCDGLLSAYQLKIHKTGAVTEDDMSQLYMIWKPVCSGCRVNTKDNPNCFCALVPPPNGTRKAGLWQKMSDFVESLGPDPTLDLRASDSYPAGLTNLGATCYANSILQCLYMNKSFREGIFSVEPDLLQKQPVLGQLIRLFVQLHASKMAFVDSSPFVKTLELDNRVQQDSHEFMTLLLSLLEGCLSHSKIAKARTTVQDLFRGSMFHVTTFWHVPNTAFLEVSVLHRCAQCGRESESSSKMEDFYGLELNIKGLKGLDESLDDYLAIEELHGDNQYFCGSCKTRVDATRSIKLCTLPDVLNFQLKRYVFLPQNTTKKKVTSAFSFPAELDMHRRLSEPSQFELIYDLSAVLIHKGTAVNSGHYIAHIKDENTGQWWEFDDEQVTNLGFHPFGETASSSTSKSVKTDASNCSEAILTDSNGLDAPHSQSSLQETFSSSDAYLLMYHLKHNKNVGENMDTAYGVNIKEVEGNEITAQDSPFVPSHLCDEIQNFNASYLDSCEHYKYRKNLELSCINERRQEVRSVLAEAPTQPREQPYFWICSDWLRQWADSNIPAALDNTSIQCSHGKVPVFKVTSMKRLSAKAWNILLSKYGGGPTLSHDDCCWDCLIDGAQNVVSADTYRDQRESLKQLARAILDGNYKDGMYYVSRPWLQQWWKRKVVDAPSEADAGPTTSITCPHGQLMPVQAVGAKRLLVPECFWLFLYKDAISVKPDDPLGCPTFPLDSRECCQCSDEISNEACFEDSLRLVKQMQRQNHEKLFVGKSMPLSLHCKYFLVPSSWISKWRNFVNFAVKNSDKPETLDGVIDSLMCEKHSRLVERPPELIYRRSAIISRESSVGGLTIVSENDWKCFCEEWSGIETKGISARIEKVNDLENALNGSCKEMPICEDKLDTWDNVNNESYIGVNEQLVIKTYPEKTP 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01642 936 FunFam Ubiquitin carboxyl-terminal hydrolase 26 520 618 - -
Spst8g01642 936 SUPERFAMILY DUSP-like 533 620 IPR035927 -
Spst8g01642 936 Gene3D Cysteine proteinases 99 465 - -
Spst8g01642 936 ProSiteProfiles DUSP domain profile. 529 621 IPR006615 GO:0004843
Spst8g01642 936 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 109 465 IPR028889 -
Spst8g01642 936 ProSiteProfiles DUSP domain profile. 764 884 IPR006615 GO:0004843
Spst8g01642 936 FunFam ubiquitin carboxyl-terminal hydrolase 48 96 465 - -
Spst8g01642 936 ProSiteProfiles DUSP domain profile. 636 738 IPR006615 GO:0004843
Spst8g01642 936 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 363 381 IPR018200 GO:0004843|GO:0006511
Spst8g01642 936 Gene3D - 760 881 IPR035927 -
Spst8g01642 936 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 110 125 IPR018200 GO:0004843|GO:0006511
Spst8g01642 936 SUPERFAMILY Cysteine proteinases 107 466 IPR038765 -
Spst8g01642 936 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 78 464 - -
Spst8g01642 936 Pfam Ubiquitin carboxyl-terminal hydrolase 110 462 IPR001394 GO:0004843|GO:0016579
Spst8g01642 936 CDD Peptidase_C19L 110 462 IPR033841 GO:0004843
Spst8g01642 936 SMART dusp 547 618 IPR006615 GO:0004843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01642 Spst-Chr8 19090157 19101453 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01642 108 455 Miscellaneous Gene Families AT4G31670 26.882 2.44e-23 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01642 - - gmx:100795556 1569.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01642 8 19090157 19101453 Spst9g00864 9 7581193 7592982 PCT