Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00800 ATGGGTAGAAGGAGAATCCAACTGTTTGATGAGAAAAGTGATGGGTTTTTCTCTGCCAGCTGCTTGGGGTTCCAATCCGAAGATAGGTGCTACCAATTCGGAGGCTTGTTTGCCAGTGTTGGTCAGGTGGGAATGGGGGTTGGCGTGCAACCAAGTGACCCTTCTGATCCGCGCGACAATGGTGGCACGAAGCTTCCCTTCAATGAACTGTTCATCAGGTACCAGGGAAAAGATGAGGTTGTTGAAGAAAGGGTTGATGGCAAGAAGAGAAAGGGTGGTGTTTCACTGAGGATTAAGATAAAAAACCCTTCTCTGAGAAGGTTGTTTAGTGGGGCAATAGCTGGGGCTGTGTCTCGCACTGCTGTAGCACCTTTGGAGACTATAAGAACTCTTATGATGGTGGGAAGTAGTGACCATTCCACCACTGAGGTGTTCCACAATATCATTAAAACTGATGGCTGGAAGGGCTTGTTTAGGGGTAATTTTGTTAACGTCATTCGAGTTGCGCCTAGCAAGGCCATTGAGCTATTTACTTTCGATACAGTAAACAAGAACCTATCCCCAAAGCCTGGGGAGGAATCCAAATTCCCAATTCCTGCATCCTTGATTGCAGGTGCCTGTGCTGGATTGACTTCAACTTTATGTACATATCCTCTTGAATTAGTCAAGACTCGACTAACTGTCCAGAGAGATGTGTATGATGGTCTTCTTCATGCATTCGTGAAAATAATTCGAGAAGAGGGTCCTGCTGAACTTTACAGTGGCCTTGCAGCTAGTCTTATTGGAGTTGTCCCCTATGCTGCAGCCAATTACTATGCATATGACACTTTAAAGAAAGCATACCGGAAAATTTTTAAACAAGAGAAGGTGGGAAATATTGAAACCCTTTTGATCGGTTCGATAGCTGGTGCTATTTCAAGTAGCTCAACTTTTCCAATGGAGGTTGCTCGCAAGCAAATGCAACTTGGTACTCTCAGTGGAAGACAGGTTTACAAGAATGTGTTTCATGCCCTTGCATGCATACTAGAACAAGAAGGGATGCAAGGTTTGTATAGAGGGTTGGCACCTAGTTGCATGAAGTTGATACCAGCCGCTGGAATCTCTTTCATGTGCTACGAAGCATGCAAGAGGATATTTCTAGAGAACGATGAGGAGGATTAG 1161 0.4479 MGRRRIQLFDEKSDGFFSASCLGFQSEDRCYQFGGLFASVGQVGMGVGVQPSDPSDPRDNGGTKLPFNELFIRYQGKDEVVEERVDGKKRKGGVSLRIKIKNPSLRRLFSGAIAGAVSRTAVAPLETIRTLMMVGSSDHSTTEVFHNIIKTDGWKGLFRGNFVNVIRVAPSKAIELFTFDTVNKNLSPKPGEESKFPIPASLIAGACAGLTSTLCTYPLELVKTRLTVQRDVYDGLLHAFVKIIREEGPAELYSGLAASLIGVVPYAAANYYAYDTLKKAYRKIFKQEKVGNIETLLIGSIAGAISSSSTFPMEVARKQMQLGTLSGRQVYKNVFHALACILEQEGMQGLYRGLAPSCMKLIPAAGISFMCYEACKRIFLENDEED 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00800 386 PRINTS Mitochondrial carrier protein signature 253 271 IPR002067 GO:0055085
Spst9g00800 386 PRINTS Mitochondrial carrier protein signature 211 229 IPR002067 GO:0055085
Spst9g00800 386 PRINTS Mitochondrial carrier protein signature 299 321 IPR002067 GO:0055085
Spst9g00800 386 PRINTS Mitochondrial carrier protein signature 107 120 IPR002067 GO:0055085
Spst9g00800 386 PRINTS Mitochondrial carrier protein signature 160 180 IPR002067 GO:0055085
Spst9g00800 386 PRINTS Mitochondrial carrier protein signature 120 134 IPR002067 GO:0055085
Spst9g00800 386 Pfam Mitochondrial carrier protein 197 283 IPR018108 -
Spst9g00800 386 Pfam Mitochondrial carrier protein 290 382 IPR018108 -
Spst9g00800 386 Pfam Mitochondrial carrier protein 103 186 IPR018108 -
Spst9g00800 386 PANTHER SOLUTE CARRIER FAMILY 25 101 379 - -
Spst9g00800 386 ProSiteProfiles Solute carrier (Solcar) repeat profile. 196 280 IPR018108 -
Spst9g00800 386 SUPERFAMILY Mitochondrial carrier 103 374 IPR023395 -
Spst9g00800 386 Gene3D Mitochondrial carrier domain 99 384 IPR023395 -
Spst9g00800 386 ProSiteProfiles Solute carrier (Solcar) repeat profile. 102 185 IPR018108 -
Spst9g00800 386 ProSiteProfiles Solute carrier (Solcar) repeat profile. 290 378 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00800 Spst-Chr9 6900202 6903119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00800 1 385 Organic Solute Cotransporters AT4G32400 64.031 1.01e-175 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00800 K14684 - gmx:100810035 632.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00800 9 6900202 6903119 Spst9g00800 9 6900202 6903119 ECH
Spst8g01555 8 17241480 17244379 Spst9g00800 9 6900202 6903119 PCT