Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01555 ATGGGTCGGAGAGGGATCAAGCTTTTTGATGAAGAAAGGAACGGTCTTTTCTCAATTTCCAATTTTGGGTCTCAATGGGATGCCGGTGTTCACGACCCTGTGGCTATGTTTGCTAGCGTTAGTCAAATGGGTATAGGGTTTGGCGTTCAAGAGCCGAACCCTTCTTCTGGTGATTCCCAGCATAATAGTGGCATGAACATTAGGATCCCCTGCACTGAGATGTACGTGAGGTATGTGCAATCAGAGGGGAAGGTGAAGATTATTGGGGTTCCTGGGGAAGAAGAGGCGGTGGCTGGTGTAAAGGGGAAGAAAAAGGGTGTCTTTAAAGGGTTGAAGATCAAGGTGAAGAACCCTTCCCTTAGGAGGTTACTTAGTGGTGCCTTTGCTGGGGCACTGTCACGCACAGCTGTGGCACCCTTGGAGACTATTCGGACTCATTTGATGGTTGGAAGTAGTGGGAATTCTACTGGGGAGGTGTTCAGCAATATCATGAAGACTGATGGGTGGAAAGGCTTGTTTAGGGGTAATTTTGTTAATGTGATCCGCGTTGCACCTAGCAAGGCCATTGAGCTATTTGCGTATGATACGGTAAACAAGAACCTCTCACCAAAGCCAGGGGAGCAACCTAAACTCCCTATTCCTCCATCACTGATAGCAGGTGCTTGTGCTGGAGTTAGTTCAACTATATGCACGTATCCTCTGGAGTTACTAAAGACTCGGCTAACTATCCAGAGGGGTGTTTATGAGGGTCTACTAGATGCATTCGTGAAAATAGTGAGAGAAGAGGGTGCCGGAGAACTTTACAGAGGCCTCACTCCCAGCCTTATTGGAGTTATACCATATTCTGCCACCAATTACTTTGCCTATGACACCTTGAGGAAAGCATACAGAAAAATTTTCAAAAAAGGGAAGATTGGCAACATTGAAACCCTTTTGATAGGATCAGCAGCTGGTGCTATTTCAAGTAGTGCTACCTTTCCTCTTGAAGTGGCTCGCAAGCATATGCAAGTGGGAGCCCTCAGTGGAAGGCAAATATACAAGAATGTGATTCATGCCCTTGCAAGCATTCTTGAGCAAGAAGGGATCCAAGGATTGTACAAAGGGTTGGGACCTAGCTGCATGAAGTTGGTGCCAGCTGCAGGAATTTCTTTCATGTGCTATGAAGCATGCAAGAGGGTCCTGATAGAGGACGATGATGAGGAGTAG 1206 0.4668 MGRRGIKLFDEERNGLFSISNFGSQWDAGVHDPVAMFASVSQMGIGFGVQEPNPSSGDSQHNSGMNIRIPCTEMYVRYVQSEGKVKIIGVPGEEEAVAGVKGKKKGVFKGLKIKVKNPSLRRLLSGAFAGALSRTAVAPLETIRTHLMVGSSGNSTGEVFSNIMKTDGWKGLFRGNFVNVIRVAPSKAIELFAYDTVNKNLSPKPGEQPKLPIPPSLIAGACAGVSSTICTYPLELLKTRLTIQRGVYEGLLDAFVKIVREEGAGELYRGLTPSLIGVIPYSATNYFAYDTLRKAYRKIFKKGKIGNIETLLIGSAAGAISSSATFPLEVARKHMQVGALSGRQIYKNVIHALASILEQEGIQGLYKGLGPSCMKLVPAAGISFMCYEACKRVLIEDDDEE 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01555 401 ProSiteProfiles Solute carrier (Solcar) repeat profile. 211 295 IPR018108 -
Spst8g01555 401 ProSiteProfiles Solute carrier (Solcar) repeat profile. 117 200 IPR018108 -
Spst8g01555 401 PANTHER SOLUTE CARRIER FAMILY 25 113 394 - -
Spst8g01555 401 Pfam Mitochondrial carrier protein 118 201 IPR018108 -
Spst8g01555 401 Pfam Mitochondrial carrier protein 211 298 IPR018108 -
Spst8g01555 401 Pfam Mitochondrial carrier protein 305 396 IPR018108 -
Spst8g01555 401 Gene3D Mitochondrial carrier domain 113 399 IPR023395 -
Spst8g01555 401 SUPERFAMILY Mitochondrial carrier 118 389 IPR023395 -
Spst8g01555 401 PRINTS Mitochondrial carrier protein signature 122 135 IPR002067 GO:0055085
Spst8g01555 401 PRINTS Mitochondrial carrier protein signature 268 286 IPR002067 GO:0055085
Spst8g01555 401 PRINTS Mitochondrial carrier protein signature 175 195 IPR002067 GO:0055085
Spst8g01555 401 PRINTS Mitochondrial carrier protein signature 314 336 IPR002067 GO:0055085
Spst8g01555 401 PRINTS Mitochondrial carrier protein signature 135 149 IPR002067 GO:0055085
Spst8g01555 401 PRINTS Mitochondrial carrier protein signature 226 244 IPR002067 GO:0055085
Spst8g01555 401 ProSiteProfiles Solute carrier (Solcar) repeat profile. 305 393 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01555 Spst-Chr8 17241480 17244379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01555 302 401 Organic Solute Cotransporters AT4G32400 31.373 2.25e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01555 K14684 - gmx:100816041 657.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01555 8 17241480 17244379 Spst8g01555 8 17241480 17244379 ECH
Spst8g01555 8 17241480 17244379 Spst9g00800 9 6900202 6903119 PCT