Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00787 TCGAAAATTTTGTTTTGCAGAAATGATGAATTTTGCCGTGGGGGTTCTGTATATCCTAACCCCAAGGAACCATGCCTCTTCTTGTCTCTTGGCCGTTCAGTTGATGTTCACTATCCTCTTCAGAAGAGATCTCGCATCAGTGTTCCAGTTGATAGCAATGGACAATGGTTTGATAAGCAGAAGCAGAATACCTCTATTGAATCTTTGCCAGATGAATGCCTTTTTGAGGTCCTTAGAAGGTTGCCTGCCGGCCAAGATAGGAGTGTCTGTGCTTCTGTATCCAAGCGCTGGCTTATGCTTCTTAGCAGTATTTGTAAGAATGAAATATGCAGCAATGGAAATCCCACAAATGATAATGATCAGGGATTGAGCAACGAAGGACACCTGTACCGAAGCTTGGAGGGAAAGAAGGCAACAGATGTCAGACTCGCTGCCATTGCTGTTGGGACAGCGCCTCGAGGAGGGTTGGGGAAGCTTACAATTCGTGGATGCAATTCAGGTGGTGGAGTCACTAATGTAGGTCTCAAGGCCATTGCTAATGGATGCCCTTCTCTAAAGGTTTTCTCTGCGTATGATGTTACTACTATTAATGATGACGGCCTGATTGCCCTTGCTAATGGGTGTTATCGGTTAGAGAAGCTTGACCTTTGCAAGTGCCCCAATATTTCTGACAAGTCTTTAATTGCAGTCGCCAGGAATTGTCCAAGTTTAACTGAGCTATCATTTGAGTCATGTCCTAATATTGGTAACAAAGGTTTACAAGCTTTTGGGATGTTTTGTCCCAATCTAAGGTCTGTCTCAATTAAGGGTTGCTTCGGAGTTGGTGATAATGGAATTGCTAGCCTCATGTCTTCAACTTCTTATGTTCTAAAAATGTTGAAGCTTGAGTCGCTGGATGTGTCTGATGTCTCTGTAGCAATGATTGGGCATTATGGCTTGCAAGTTACTGATCTTGTCCTAAGTTGCCTCCCAAATGTCAGTGAGAAAGGGTTTTGGGTGATGGGTAATGGCCGTGGACTGCAGAAACTGAATTCAATCACTATCGAATGCTGCCCAGGATTGACAGACATAGGGATTGGATCTATTGGAAAGGGTTGTCCAAATGTGAAAAGTTTCCAGCTTCGTAAATGTTCATTTCTGTCAGACAAGGGGTTGGTTTCATTTACCAGGGCTGCTGTATCAATTCAGAGCCTACAATTGCAGGAGTGCCACAGAATTACCCAAATTGGACTTTTTGGTGTCTTTTTTCACTGTTCTGCAAAATTGAAGGTTCTTGTTCTGATTAGCTGCTATGGGATCAAAGATCTGACCATGAACTTGCCACCAATAACTCCTTGTGAATCATTTTGGTCCTTAACAATCCGTGACTGTCCTGGATTTGGCAATGCTAATCTTGCATTACTTGGAAAGCTCTGTCCCCAGCTTAAGCATGTTGAATTGTGTGGACTTCAGCGGGTAACAGAAGCAGGGTATCTTCCACTGCTGGAGTGTTCTGAGGCTGGTCTAGTCAAAGTTATTTTAAAGGGATGTGTAAATGTGACGGACAGAGTAGTTTTGCCTGTGGTCAACACTCATGGATGGACTCTTGAGATGCTGTGTCTTGAAGGTTGTAGAAGAGTCACCGATGCTAGCATGATTGGAATTGCAGCCCATTGCCCGATGTTGTCTGATCTTGATCTTTCCAAGTGTGCAATCACCGATGCTGGCATTGCAGCTCTTGCACGGGGAAATCAGATAGGCCTGGCTGTACTTTCTGTTGCAGGTTGTATATTGCTTTCAGACCAGAGCATACCCGCACTGAAAAAAATGGGTCAATTCCTTGCAGGACTGAATATCAAGCACTGCAGTGGAATCAGCAGCCGTGTGGTCAGCGAGCTTCACGAACATCTCTTGACCTTCAAGGGGCGTCTTGAAGTTCCAGCTTTGTGCTGGTTTTGTCTTGGTTACTTTTGCGGTTCAGAGTTTTATGAAGCCTTTCTCTTCAGGGGCTTTGGCCATGCCAGCCGATTCTATAGGTCTTATTCTCAGAAGGCATTATTGGCGATGATGTATGATATGAAAAGACTTGACATGTGGTCGCAACACTATGGAACAATGGCCTTGCCCTCTAAGTCTACACGTGATAATTTTCCATCCAAACCTTCCTTATTTCGCTTAGCGTGGGACGATGAGGTTTTGATTAAGTGGGCTTGGGAAAATGAACAACCCAGCGTTACAACAAGACTTTCAGAGTAA 2235 0.4425 SKILFCRNDEFCRGGSVYPNPKEPCLFLSLGRSVDVHYPLQKRSRISVPVDSNGQWFDKQKQNTSIESLPDECLFEVLRRLPAGQDRSVCASVSKRWLMLLSSICKNEICSNGNPTNDNDQGLSNEGHLYRSLEGKKATDVRLAAIAVGTAPRGGLGKLTIRGCNSGGGVTNVGLKAIANGCPSLKVFSAYDVTTINDDGLIALANGCYRLEKLDLCKCPNISDKSLIAVARNCPSLTELSFESCPNIGNKGLQAFGMFCPNLRSVSIKGCFGVGDNGIASLMSSTSYVLKMLKLESLDVSDVSVAMIGHYGLQVTDLVLSCLPNVSEKGFWVMGNGRGLQKLNSITIECCPGLTDIGIGSIGKGCPNVKSFQLRKCSFLSDKGLVSFTRAAVSIQSLQLQECHRITQIGLFGVFFHCSAKLKVLVLISCYGIKDLTMNLPPITPCESFWSLTIRDCPGFGNANLALLGKLCPQLKHVELCGLQRVTEAGYLPLLECSEAGLVKVILKGCVNVTDRVVLPVVNTHGWTLEMLCLEGCRRVTDASMIGIAAHCPMLSDLDLSKCAITDAGIAALARGNQIGLAVLSVAGCILLSDQSIPALKKMGQFLAGLNIKHCSGISSRVVSELHEHLLTFKGRLEVPALCWFCLGYFCGSEFYEAFLFRGFGHASRFYRSYSQKALLAMMYDMKRLDMWSQHYGTMALPSKSTRDNFPSKPSLFRLAWDDEVLIKWAWENEQPSVTTRLSE 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00787 744 PANTHER UNCHARACTERIZED 450 620 - -
Spst9g00787 744 SMART fbox_2 69 110 IPR001810 GO:0005515
Spst9g00787 744 SMART LRR_CC_2 366 391 IPR006553 -
Spst9g00787 744 SMART LRR_CC_2 526 551 IPR006553 -
Spst9g00787 744 SMART LRR_CC_2 499 524 IPR006553 -
Spst9g00787 744 SMART LRR_CC_2 340 365 IPR006553 -
Spst9g00787 744 SMART LRR_CC_2 234 259 IPR006553 -
Spst9g00787 744 SMART LRR_CC_2 552 576 IPR006553 -
Spst9g00787 744 SMART LRR_CC_2 472 497 IPR006553 -
Spst9g00787 744 SMART LRR_CC_2 182 207 IPR006553 -
Spst9g00787 744 SMART LRR_CC_2 260 285 IPR006553 -
Spst9g00787 744 SMART LRR_CC_2 208 233 IPR006553 -
Spst9g00787 744 SMART LRR_CC_2 392 417 IPR006553 -
Spst9g00787 744 SMART LRR_CC_2 604 629 IPR006553 -
Spst9g00787 744 Pfam Leucine Rich repeat 551 574 IPR001611 GO:0005515
Spst9g00787 744 Pfam Leucine Rich repeat 233 256 IPR001611 GO:0005515
Spst9g00787 744 Pfam F-box domain 67 105 IPR001810 GO:0005515
Spst9g00787 744 SUPERFAMILY F-box domain 61 103 IPR036047 GO:0005515
Spst9g00787 744 SUPERFAMILY RNI-like 157 653 - -
Spst9g00787 744 FunFam EIN3-binding F-box protein 1 247 437 - -
Spst9g00787 744 FunFam EIN3-binding F-box protein 1 59 108 - -
Spst9g00787 744 Gene3D Ribonuclease Inhibitor 59 286 IPR032675 -
Spst9g00787 744 Gene3D Ribonuclease Inhibitor 444 641 IPR032675 -
Spst9g00787 744 Gene3D Ribonuclease Inhibitor 287 443 IPR032675 -
Spst9g00787 744 FunFam EIN3-binding F-box protein 1 128 246 - -
Spst9g00787 744 FunFam EIN3-binding F-box protein 1 498 634 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00787 Spst-Chr9 6758040 6766917 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00787 K14515 - gmx:547505 959.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00787 9 6758040 6766917 Spst9g00787 9 6758040 6766917 ECH
Spst8g01547 8 16775040 16777636 Spst9g00787 9 6758040 6766917 PCT