Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01547 ATGTCTCAAGTTCTCGGATTTTCCGGAGGTGATGACTTTTGCTCTGGGGGATCAATATACGCCAACCCCAAGGAAGCAAGTTTCTTCCTTTCTCTTGGCCCTCAAGTTGATGTATACTTTCCTCCTAGGAAGAGATCGCGCGTCAATGCTCCATTCATTTTGGATGGAGAATGGTTTGAGCAAAAGCAGAAAACCTCTGTTGAAGCCTTGCCGGATGAGTGTCTCTTTGAGATCTTTAGAAGGTTGCCAGCTGGTGAGGACAGGAGTGCGTGTGCTTGCGTTTCCAAGCGCTGGCTTATGCTTCTGAGCAGTATTTGCAAAGATGAAATCTGTGTCAACAAAAATACCAGCGCAGGAAACATTGAAAAGGAGGGTGATGATGTAGAATTTGGAGGTGATGGATACCTCTCTCGGAACTTGGAAGGAAAGAAGGCCACAGATGTTAGACTGGCTGCCATAGCTGTTGGGACTGCATCTCGGGGAGGGTTGGGGAAGCTTTCTATCCGAGGAAACAACATGTTTCGCGGGGTGACTAGTCTTGGTCTCAAGGCAGTTGCTCATGGATGCCCTTCTTTGAAGTCTCTTTCTCTATGGAATGTTTCTTCTGTTGATGATGAGGGCCTAATTGAGATTGCTAATGGTTGTCACCAGCTAGAGAAGCTCGACCTTTGCAAGTGCCCCACAATTACTGATAAGGGTTTAGTTGCAATTGCAAAGAACTGCCAGAATCTGACCGATCTGTTGTTGGAATCATGCCCTAATGTTGGTAATGAAGGTCTGCGAGCTATTGGGAAGTTCTGCCCCAATCTAAAGTCCATAACCATCAAGGACTGCACTGGTGTTAGTGATCAGGGAATTGCTGGATTGTTTTCAACTTCTTTGGTTCTGACAAAGGTGAAGCTCCAGGGACTGTTTGTTTCAGATCTCTCTCTAGCTGTTATTGGACATTATGGCAAGTCAGTTACTGATCTTGTCCTTAATTGTCTCCCTAATGTCAGTGAGAAGGGGTTCTGGGTAATGGGTAATGGTACTGGATTGCAGAAGCTGAAGTCACTCACAGTTTCATCCTGCAGAGGAGTAACTGATATTGGACTTGAAGCTGTAGGAAAGGGTTGTCCAAATCTGAAAATTGCACATCTTCACAAGTGTGCATTTCTGTCAGACAATGGGTTGATATCGTTTGCTAAGGCTGCTTTATCACTCGAGAGCCTTCGATTGGAGGAGTGCCACAGAATCACCCAATTTGGATTTTTTGGTGTCCTTTTTAACTGTGGTGCAAAATTGAAGGCCATCTCTTTGGTGAGATGCTACGGAATCAAGGACCTGAATTTGGTGTTGCCTACTATATCTCCATGTGAATCGCTTAGGTCATTAACTATCTCCAACTGTCCTGGATTTGGCAATGCCTCCCTATCTGTATTGGGAAAGCTGTGCCCTAAGCTTCAGCATGTTGAACTGAGTGGATTGGATGGAGTGACTGATGCCGGGCTTCTTCCACTGCTTGAGAGTTCTGAGGCTGGATTAGTTAAAGTGAATCTCAGTGGTTGCACAAATGTCACGGACAAAGTAGTTTCATCCATGGCCAATCTTCATGGTTGGACTCTTGAGAACCTTAACCTTGATGGCTGTAAAAACATCAGTGATGCTAGCTTGATGGCAATTGCTGAAAACTGTGCATTGCTATGCGATCTTGATGTCTCCAAGTGCTCAATCACAGATGCTGGCGTAGCAGCCCTGGCACATGCCCAACAAATTAATCTGCAAATTCTCTCTCTGTCAAGTTGCACTTTGGTCTCAGACAGGATCTTGCCCGCCTTGAGAAAATTGGGCCGCACCCTTTTGGGACTAAACATCCAGCACTGCAATGCGATTAACAGCAGCACAGTTGACGTGCTTCTGGAGCTTCTCTGGAGGTGTGACATCCTCTCATAG 1932 0.4576 MSQVLGFSGGDDFCSGGSIYANPKEASFFLSLGPQVDVYFPPRKRSRVNAPFILDGEWFEQKQKTSVEALPDECLFEIFRRLPAGEDRSACACVSKRWLMLLSSICKDEICVNKNTSAGNIEKEGDDVEFGGDGYLSRNLEGKKATDVRLAAIAVGTASRGGLGKLSIRGNNMFRGVTSLGLKAVAHGCPSLKSLSLWNVSSVDDEGLIEIANGCHQLEKLDLCKCPTITDKGLVAIAKNCQNLTDLLLESCPNVGNEGLRAIGKFCPNLKSITIKDCTGVSDQGIAGLFSTSLVLTKVKLQGLFVSDLSLAVIGHYGKSVTDLVLNCLPNVSEKGFWVMGNGTGLQKLKSLTVSSCRGVTDIGLEAVGKGCPNLKIAHLHKCAFLSDNGLISFAKAALSLESLRLEECHRITQFGFFGVLFNCGAKLKAISLVRCYGIKDLNLVLPTISPCESLRSLTISNCPGFGNASLSVLGKLCPKLQHVELSGLDGVTDAGLLPLLESSEAGLVKVNLSGCTNVTDKVVSSMANLHGWTLENLNLDGCKNISDASLMAIAENCALLCDLDVSKCSITDAGVAALAHAQQINLQILSLSSCTLVSDRILPALRKLGRTLLGLNIQHCNAINSSTVDVLLELLWRCDILS 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01547 643 Gene3D Ribonuclease Inhibitor 242 443 IPR032675 -
Spst8g01547 643 SUPERFAMILY F-box domain 63 104 IPR036047 GO:0005515
Spst8g01547 643 Gene3D Ribonuclease Inhibitor 150 241 IPR032675 -
Spst8g01547 643 Pfam F-box domain 70 107 IPR001810 GO:0005515
Spst8g01547 643 Gene3D Ribonuclease Inhibitor 444 643 IPR032675 -
Spst8g01547 643 SMART LRR_CC_2 372 397 IPR006553 -
Spst8g01547 643 SMART LRR_CC_2 215 240 IPR006553 -
Spst8g01547 643 SMART LRR_CC_2 189 214 IPR006553 -
Spst8g01547 643 SMART LRR_CC_2 267 292 IPR006553 -
Spst8g01547 643 SMART LRR_CC_2 505 530 IPR006553 -
Spst8g01547 643 SMART LRR_CC_2 241 266 IPR006553 -
Spst8g01547 643 SMART LRR_CC_2 346 371 IPR006553 -
Spst8g01547 643 SMART LRR_CC_2 558 582 IPR006553 -
Spst8g01547 643 SMART LRR_CC_2 532 557 IPR006553 -
Spst8g01547 643 SMART LRR_CC_2 584 612 IPR006553 -
Spst8g01547 643 SMART LRR_CC_2 452 477 IPR006553 -
Spst8g01547 643 SMART LRR_CC_2 398 423 IPR006553 -
Spst8g01547 643 SMART LRR_CC_2 478 503 IPR006553 -
Spst8g01547 643 Pfam Leucine Rich repeat 347 368 IPR001611 GO:0005515
Spst8g01547 643 Pfam Leucine Rich repeat 478 500 IPR001611 GO:0005515
Spst8g01547 643 Pfam Leucine Rich repeat 564 580 IPR001611 GO:0005515
Spst8g01547 643 Pfam Leucine Rich repeat 240 263 IPR001611 GO:0005515
Spst8g01547 643 Pfam Leucine Rich repeat 215 238 IPR001611 GO:0005515
Spst8g01547 643 CDD F-box_AtTIR1-like 69 104 - -
Spst8g01547 643 FunFam EIN3-binding F-box protein 1 135 253 - -
Spst8g01547 643 FunFam EIN3-binding F-box protein 1 254 443 - -
Spst8g01547 643 SUPERFAMILY RNI-like 160 357 - -
Spst8g01547 643 FunFam EIN3-binding F-box protein 1 446 643 - -
Spst8g01547 643 SMART fbox_2 70 111 IPR001810 GO:0005515
Spst8g01547 643 FunFam EIN3-binding F-box protein 1 60 109 - -
Spst8g01547 643 PANTHER UNCHARACTERIZED 534 626 - -
Spst8g01547 643 Gene3D - 60 111 - -
Spst8g01547 643 SUPERFAMILY RNI-like 316 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01547 Spst-Chr8 16775040 16777636 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01547 K14515 - gmx:100820247 1146.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01547 8 16775040 16777636 Spst8g01547 8 16775040 16777636 ECH
Spst8g01547 8 16775040 16777636 Spst9g00787 9 6758040 6766917 PCT