Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00774 ATGGTTGACAATCGAGTCTCCGTTATGGATGAGAGAAGCTTGATCATTGTTTCCAATGGAAGCCATCGACACTCACCCAGCATGAACTACGTAGATGGCAACTTTTCCTACGACAGGCCTCCTTGCGAAACGCTCAACCTCCTCCTCATCAAATTGGACGCCTCTTCATTCAGCGTTGAAGTTGCTAATGAAGCAACTGTTGCAGAACTCAAGCAGGCTATGGAGGCGATTTTCGCTCACTTGCCTCTGAAGGGCAAAATATTGTGGCCACTTGTTTGGCGGCAATTTTGTTTATCCTATCAAGAACGAAAATTAGTTACAGAAACGGATTACCTTAGAGATTATGGAATCAAGGATGGTGACCAGCTTCATTTTGTGCACCATATATCTCACACTTGCAGTTGCCAGAGTAGGCAGTCAAAGAAACGAGGTTTCAATTTGAAAAGACACAGGAGGCCATCGTCTCACCAAGTGAATAGATATCAACAGAAAGAACATAACGATGACGACGACATTGGTTTGAATGATATAGTCATAGAGAAGGGGAAGATCCAGAATTCCAGTGCAGAGCACAATCAAGGAGGAAAGAGCTGGCTATCTGGCTTTTCGGAAGGACTATTCTCACACAGCCGTCTGTTAGTTACGATAAGAGCTAGAACTGAGGGCATGATTTGCTGCTCAACGATGATTCCATCAGCCAGCCACTGCCACACAACCTCAGTAGCCATGGCAAACATGATTATGGCTTCCACTAAACCTTTGGTTCCAGTCTGCACTAATTCTCGTTCCCCCACCACATCCAAACTTCCCATTCTCCAAATTTCACTCCCCAAAGTCCCAATCCTGAAACTGAAATTCCCAATTTCCAAGCCCCAGATGCTGTCCCTCCTCGGGGGAATAGCACCACTGGTCTTGGCCCGGCCCTCCCTCGCAGAAGAAATGGAGAAAGCTGCACTCTTCGACTTCAACCTGACACTGCCAATTATAATGGTGGAGTTTCTGCTGCTGATGGTTGCTCTGGACAAGATATGGTTCACCCCACTAGGGAAATTCATGGACGAGAGGGACGCGGCTATCAGGGAGAAGCTGAGCAGCGTGAAGGACACGTCGGAGGAGGTAAAGCAGTTGGAGGAGAAGGCGAATGCCGTGATGGCGGCTGCTCGGGCGGAGATAGCGGCGGCGCTGAACGCGATGAAGCTGGAGACGCAGGCTGAGGTGGAGCAGAAGATTGCAGAGGGAAGGAAGAAAGTGGAGGCTGAGCTTCAGGAGGCTCTGGCTAACTTGGAGAGGCAAAAGGAAGAAACCATCAAGGCCCTTGATTCCCAGATTGCAGATCTTAGCCAGGAGATTGTTAAAAAGGTTCTTCCTATTGCTTAA 1377 0.4837 MVDNRVSVMDERSLIIVSNGSHRHSPSMNYVDGNFSYDRPPCETLNLLLIKLDASSFSVEVANEATVAELKQAMEAIFAHLPLKGKILWPLVWRQFCLSYQERKLVTETDYLRDYGIKDGDQLHFVHHISHTCSCQSRQSKKRGFNLKRHRRPSSHQVNRYQQKEHNDDDDIGLNDIVIEKGKIQNSSAEHNQGGKSWLSGFSEGLFSHSRLLVTIRARTEGMICCSTMIPSASHCHTTSVAMANMIMASTKPLVPVCTNSRSPTTSKLPILQISLPKVPILKLKFPISKPQMLSLLGGIAPLVLARPSLAEEMEKAALFDFNLTLPIIMVEFLLLMVALDKIWFTPLGKFMDERDAAIREKLSSVKDTSEEVKQLEEKANAVMAAARAEIAAALNAMKLETQAEVEQKIAEGRKKVEAELQEALANLERQKEETIKALDSQIADLSQEIVKKVLPIA 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00774 458 Pfam Ubiquitin-like domain 47 129 IPR040610 -
Spst9g00774 458 SUPERFAMILY Ubiquitin-like 42 131 IPR029071 -
Spst9g00774 458 Pfam ATP synthase B/B' CF(0) 326 455 IPR002146 GO:0015078|GO:0015986|GO:0045263
Spst9g00774 458 Coils Coil 411 449 - -
Spst9g00774 458 MobiDBLite consensus disorder prediction 144 167 - -
Spst9g00774 458 Hamap ATP synthase subunit b [atpF]. 320 457 IPR002146 GO:0015078|GO:0015986|GO:0045263
Spst9g00774 458 Hamap ATP synthase subunit b' [atpF2]. 319 456 IPR034679 GO:0015078|GO:0015986|GO:0045263
Spst9g00774 458 Gene3D - 41 137 - -
Spst9g00774 458 ProSiteProfiles Ubiquitin domain profile. 45 126 IPR000626 GO:0005515
Spst9g00774 458 PANTHER ATP SYNTHASE SUBUNIT B', CHLOROPLASTIC 308 456 - -
Spst9g00774 458 CDD ATP-synt_Fo_b 325 455 - -
Spst9g00774 458 Coils Coil 359 386 - -
Spst9g00774 458 CDD Ubl_SNRNP25 47 128 IPR040610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00774 Spst-Chr9 6655692 6659024 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00774 K02109 - pvu:PHAVU_009G092400g 660.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00774 9 6655692 6659024 Spst9g00774 9 6655692 6659024 ECH
Spst9g00774 9 6655692 6659024 Spst8g01542 8 16687043 16690288 ECH
Spst8g01542 8 16687043 16690288 Spst9g00774 9 6655692 6659024 PCT