Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00713 ATGGAGGACGATAAAATAGTTGGATATGTTACAGCGTACCTCAAGAAGAAGGGTTTCACGCAAACCGAGAAGATTTTCCAGGAAGAATTTCAGCACAACAAAACCACCAATTCCTCTTCCAATAATTCCCTCGAACCCGACGCTGGCAACCACCTCCTCGCCTTCTCCCAGTACTTTTCCTTTCTCCATCCTCATATGGTTACCCTCGGCATGCTTCACTACCTCACCGCACTCACTTTCCCTCTTTCTAACCCTATGTTTTGCAGATTGGAGACTGGCCCCGCTAGGTTCCACGACGGTTACAGCAAACTGCGAACATGGACTTATTCTTCACTGGATTTGTACAAGCACGAGTTGCTTCGCGTGCTTTATCCCGTGTTTATTCACTGTTTTATGGACCTTGTGGCGAAAGGACACGTTCAGGAAGCTCGGAATTTCTTCAATACTTTCCGTGAAGACCACGAAATGATGCACTTGCGTGACCTTCAGAAGTTGGAAGGAGTTCTTTCTCCTACCCATCTTCAGGAAATGGAATTCGCTCACTCTCTTAGACAGAGCAAATTCAACATAAAGATATGTGAGTGGGCATTAAGGTATTCCTATGAGCTTCTGTTGCAACATCTACACAGTACGCAATCCACCACTATACTTGGTATTATCAATGAGCATATTAATTTTCAAGTTTCCCCTGGACAACCTAGCTTAATTTCTGATGATCCGGAAGCTGTTACCCTTACTGGAAGCAGCCAGGAAGCAGCAAACAGGATAAATAAAAAAGAAATTCACTGGGGGTTACTTGAAGACTCCCTTGAAGAGCGGCTGGAGAAGGCAGGGGCCTTGCTTTCAGACTCTGAAAAGGGTGAAGGGGAAGCAAAGGAGGGAGAGAATGACGAGACTAAGAAAAGATCCATCGAAGGAGGAAAGCAAGGTGGTGGTTCAGTTAAAAAAGTTAAAAAGGACAGGGGCGGTAGTGCAACTGGAAAAAGTGCAAAACCTGAAGCTAACACTGTACCTGCGGCTCCTCGAGTTAAGCCTGAACTCCCCTTACCCGTCATAAATTGTATGGCTAATGTAAATGGCACAATTCTAAACCCAACTGAGGTTGAACACTCCATTCTTGAGGACTTAAGGAACCGTGTACAGCTCAGCAATGTTGCATTGCCATCAGGTGAGAATGACACATCGCAAAATGATCAAATGTTTGGAGAAGGTGGTGGGAAAAGACAGTATACATTGTTTCAAGGTCATTCAGGGCCTGTTTATGCAGCTTCTTTTAGTCCTGTCGGTGACTTTATCCTTTCATCCTCGGCAGACTCAACAATTCGATTGTGGAGCACCAAACTTAATGCCAACCTTGTTTGTTATAAGGGTCACAATTACCCTGTCTGGGATGTTCAGTTTAGTCCTGTAGGGCATTATTTTGCCAGCTCTTCACATGACAGAACTGCTAGGATTTGGTCCATGGATAGGATACAGCCCTTAAGAATAATGGCAGGGCACTTGTCTGATGTTGATTGTGTGCAATGGCATGCCAACTGCAACTACATTGCAACTGGTTCCAGTGACAAAACAGTTCGACTATGGGATGTGCAGAGTGGTGAGTGTGTCCGGGTTTTTGTTGGTCACCGGGGTATGATTTTGTCTTTGGCAATGTCTCCCGATGGTCGCTATATGGCATCTGGTGATGAAGATGGCACGATCATGATGTGGGACCTCTCTAGTGGCCGCTGTCTCACACCTTTGATTGGGCACACGTCCTGTGTCTGGTCCCTCGCTTTCAGTTCTGAAGGTTCTATTCTAGCCTCTGGATCTGCGGATTGCACTGTAAAATTGTGGGATGTAAATACGAGCACCAAGGTTTCAAGGGCTGAAGAAAAAAGTGGGAATGCTAACAGACTCAGATCGCTGAAAACTCTGCCAACCAAATCTACTCCAGTTTACTCGTTGCGGTTTTCTCGAAGGAATCTTCTTTTTGCGGCTGGGGCTCTAGCAAAAAGTGGCTAA 2004 0.4556 MEDDKIVGYVTAYLKKKGFTQTEKIFQEEFQHNKTTNSSSNNSLEPDAGNHLLAFSQYFSFLHPHMVTLGMLHYLTALTFPLSNPMFCRLETGPARFHDGYSKLRTWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHVQEARNFFNTFREDHEMMHLRDLQKLEGVLSPTHLQEMEFAHSLRQSKFNIKICEWALRYSYELLLQHLHSTQSTTILGIINEHINFQVSPGQPSLISDDPEAVTLTGSSQEAANRINKKEIHWGLLEDSLEERLEKAGALLSDSEKGEGEAKEGENDETKKRSIEGGKQGGGSVKKVKKDRGGSATGKSAKPEANTVPAAPRVKPELPLPVINCMANVNGTILNPTEVEHSILEDLRNRVQLSNVALPSGENDTSQNDQMFGEGGGKRQYTLFQGHSGPVYAASFSPVGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRVFVGHRGMILSLAMSPDGRYMASGDEDGTIMMWDLSSGRCLTPLIGHTSCVWSLAFSSEGSILASGSADCTVKLWDVNTSTKVSRAEEKSGNANRLRSLKTLPTKSTPVYSLRFSRRNLLFAAGALAKSG 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00713 667 ProSiteProfiles Trp-Asp (WD) repeats profile. 581 622 IPR001680 GO:0005515
Spst9g00713 667 ProSiteProfiles Trp-Asp (WD) repeats profile. 497 538 IPR001680 GO:0005515
Spst9g00713 667 Pfam WD40 associated region in TFIID subunit, NTD2 domain 92 224 IPR007582 -
Spst9g00713 667 PRINTS G protein beta WD-40 repeat signature 432 446 IPR020472 -
Spst9g00713 667 PRINTS G protein beta WD-40 repeat signature 600 614 IPR020472 -
Spst9g00713 667 PRINTS G protein beta WD-40 repeat signature 516 530 IPR020472 -
Spst9g00713 667 Pfam WD domain, G-beta repeat 452 487 IPR001680 GO:0005515
Spst9g00713 667 Pfam WD domain, G-beta repeat 410 445 IPR001680 GO:0005515
Spst9g00713 667 Pfam WD domain, G-beta repeat 492 529 IPR001680 GO:0005515
Spst9g00713 667 Pfam WD domain, G-beta repeat 575 613 IPR001680 GO:0005515
Spst9g00713 667 Pfam WD domain, G-beta repeat 533 571 IPR001680 GO:0005515
Spst9g00713 667 SMART WD40_4 532 571 IPR001680 GO:0005515
Spst9g00713 667 SMART WD40_4 574 613 IPR001680 GO:0005515
Spst9g00713 667 SMART WD40_4 406 445 IPR001680 GO:0005515
Spst9g00713 667 SMART WD40_4 490 529 IPR001680 GO:0005515
Spst9g00713 667 SMART WD40_4 448 487 IPR001680 GO:0005515
Spst9g00713 667 MobiDBLite consensus disorder prediction 312 326 - -
Spst9g00713 667 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 581 616 - -
Spst9g00713 667 MobiDBLite consensus disorder prediction 279 341 - -
Spst9g00713 667 Gene3D - 573 666 IPR015943 GO:0005515
Spst9g00713 667 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 539 576 - -
Spst9g00713 667 ProSiteProfiles Trp-Asp (WD) repeats profile. 455 496 IPR001680 GO:0005515
Spst9g00713 667 ProSitePatterns Trp-Asp (WD) repeats signature. 558 572 IPR019775 -
Spst9g00713 667 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 455 489 - -
Spst9g00713 667 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 413 445 - -
Spst9g00713 667 MobiDBLite consensus disorder prediction 279 305 - -
Spst9g00713 667 ProSitePatterns Trp-Asp (WD) repeats signature. 600 614 IPR019775 -
Spst9g00713 667 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 404 662 - -
Spst9g00713 667 FunFam Transcription initiation factor TFIID subunit 5 491 660 - -
Spst9g00713 667 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 497 534 - -
Spst9g00713 667 SUPERFAMILY Taf5 N-terminal domain-like 86 229 IPR037264 -
Spst9g00713 667 Gene3D - 493 572 IPR015943 GO:0005515
Spst9g00713 667 Gene3D TFIID subunit TAF5, NTD2 domain 85 229 IPR037264 -
Spst9g00713 667 ProSiteProfiles Trp-Asp (WD) repeats profile. 539 580 IPR001680 GO:0005515
Spst9g00713 667 ProSitePatterns Trp-Asp (WD) repeats signature. 516 530 IPR019775 -
Spst9g00713 667 ProSiteProfiles Trp-Asp (WD) repeats profile. 413 445 IPR001680 GO:0005515
Spst9g00713 667 SUPERFAMILY WD40 repeat-like 409 662 IPR036322 GO:0005515
Spst9g00713 667 CDD WD40 413 662 - -
Spst9g00713 667 CDD TAF5_NTD2 94 230 IPR007582 -
Spst9g00713 667 Gene3D - 402 492 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00713 Spst-Chr9 6095793 6105615 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00713 407 616 Miscellaneous Gene Families AT5G08390 32.243 1.42e-28 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00713 K03130 - gmx:100781563 1036.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01862 8 22902851 22923316 Spst9g00713 9 6095793 6105615 PCT