Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01862 ATGGACGAAGATCAAATAGAAGGTTGTGTAAGTGGGTACCTCAAGCAGAAAGGGTTTCCGCAAAACGATGACCAACTTCAAATCTCCAACTCCGATTCGTCTCTTCAACCTGATACTCTCACTCGTGCTCAATTAGATAGAGGTTCTGCAAGATACCATGATGGCTATGGCAGACTAAGATCATGGGCATACAGGTCACTTGAATCATACAAGCATGAGTTAATGCGTGTGCTTTATCCAGTATTTATTCATTGCTTCATGGATCTTGTGGCAAAAGGGCATCTTCACGAAGTTAATCTTTTGGACTTCTGGCAGTATTCTTACGAGCTTCTATGGCAACATCTACACAGTATGCAATCCACCACTATAATTGGTATTATCAATGAGCATATTAACTTCCAAGTTACAGCTGGACAACCAAGCTCAATTTCTGATGATCCAGAAGCTGTTACCGTCAGTGGAAGCATCCAAAATGCAGCAAACCAGATAAATCAGAAAGAAATACTTTGGGGGTGGGGAATTGCTGAACCCATCCATACTCCTTTCTCGTCCTGTGACTTGTCTTGGACTGTAACATCATCATTAACGAATCTGATAAAATATGTTGACTCTAATGTGGATTCAATGTTTGAAGATTCTATAGAAGACCACATAGACAAGGCTGGGGCCTTGCTTTCACGCACAGAAAAGGGTGAAGGGGAAGGCAAAGAGATAGACAATGATGAGAGTAAGAAAAGGTCAATTGATGTTGGAAAGCAAGGTAATTCAGTAAAAAAGGTAAAAAAGGACAAGGTCAGCAGTGCAACAGGGAAAAATGCTAAACCAGAAGCTAACACTATATCTGCAGCACCTCGCATTAAACCAGAGCTACCCCTGCCCACAGTTTCAACTGATGTAGAACTGTCTATTCTTGAAGATTTAAGGAATCGTGTACAATTGAGTAGTGTTGCTCTCCCTTCAGTTAACTTCTACACATTTGTAAATACGCATAATGGTTTAAGCTGTTCGTCAATATCTCATGATGGATCATTGCTTGCTGGAGGATTTTCTGACTCATCACTAAAGGTCTGGGATATGGCGAAAATTGAGCAACAATCCACCACTTTTTTTTTGCAGGGAGGGAATGACACATCACAAAATGAACAAATTATTGGGCAAAATAGTGGGAGAAGACAGTACACATTGTTTCAAGGTCATTCAGGTCCAGTCTATGCAGCCACTTTTAGTCCTGCTGGGGATTTTCTTCTTTCGTCTTCAGCAGACAAAACAATTCGATTATGGAGTACAAAGCTTAATGCCAATCTTGTTTGTTACAAGGGTCACAATTACCCTATCTGGGATGTTCAGTTTAGTCCTGCAGGGCATTATTTTGCCAGCTGTTCACATGACCGAACTGCTAGGATTTGGTCCATGGACAAAACAAAACCTTTAAGAATAATGGCAGGACATTTGTCAGATGTTGATTGGCCTGCCGATGCTGAATGGAGCCTCTGCATCCCTTCCTCCTTGGATTCTAGTAGGGCCCATATTAGTGGAATTAGAAGAGCCAACGCTTGGCACTTGGGTGAGGTTGACATTTTTGGGCTGAGAAGAGGCTGTAGGGCCGTTGCTATGTTGTTGAAGAAGACCAAGAAGACTGTGATATTGGGCCTTAGTGAAACCTGTGTGCAGTGGCATTCGAACTGCAACTACATTGCTACTGGCTCCAGTGACAAAACAGTTCGACTGTGGGACGTGCAAAGCGGGGAATGTGTTCGTGTTTTCATTGGTCATAGGAGTATGATTTTGTCTTTGGCAATGTCCCCTGATGGTCGCCATATGGCATCTGGTGATGAAGATGGCACAATCATGATGTGGGACCTCTCTAGTGGCTGTTGTGTCACACCTCTAGTCGGTCACACCTCGTGTGTCTGGTCACTCGCTTTCAGTTGTGAAGGTTCTCTTCTTGCATCTGGCTCTGCTGATTGCACTGTCAAATTTTGGGATGTAGCTACAGGTATAAAGGTTCCAAGGAATGAAGAAAAAAGTGGGAATACTAACAGACAGAGATCGTTGAAAAGCCTGCCAACGAAATCTGCTTCAGTTTACTCTCTCCAGTTTTCTCGCAGGAATCTTCTTTTTGCGGCTGGAGCTCTTGCAAAAAGTGCCTGTTAG 2154 0.4294 MDEDQIEGCVSGYLKQKGFPQNDDQLQISNSDSSLQPDTLTRAQLDRGSARYHDGYGRLRSWAYRSLESYKHELMRVLYPVFIHCFMDLVAKGHLHEVNLLDFWQYSYELLWQHLHSMQSTTIIGIINEHINFQVTAGQPSSISDDPEAVTVSGSIQNAANQINQKEILWGWGIAEPIHTPFSSCDLSWTVTSSLTNLIKYVDSNVDSMFEDSIEDHIDKAGALLSRTEKGEGEGKEIDNDESKKRSIDVGKQGNSVKKVKKDKVSSATGKNAKPEANTISAAPRIKPELPLPTVSTDVELSILEDLRNRVQLSSVALPSVNFYTFVNTHNGLSCSSISHDGSLLAGGFSDSSLKVWDMAKIEQQSTTFFLQGGNDTSQNEQIIGQNSGRRQYTLFQGHSGPVYAATFSPAGDFLLSSSADKTIRLWSTKLNANLVCYKGHNYPIWDVQFSPAGHYFASCSHDRTARIWSMDKTKPLRIMAGHLSDVDWPADAEWSLCIPSSLDSSRAHISGIRRANAWHLGEVDIFGLRRGCRAVAMLLKKTKKTVILGLSETCVQWHSNCNYIATGSSDKTVRLWDVQSGECVRVFIGHRSMILSLAMSPDGRHMASGDEDGTIMMWDLSSGCCVTPLVGHTSCVWSLAFSCEGSLLASGSADCTVKFWDVATGIKVPRNEEKSGNTNRQRSLKSLPTKSASVYSLQFSRRNLLFAAGALAKSAC 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01862 717 SUPERFAMILY WD40 repeat-like 324 710 IPR036322 GO:0005515
Spst8g01862 717 ProSitePatterns Trp-Asp (WD) repeats signature. 345 359 IPR019775 -
Spst8g01862 717 SUPERFAMILY Taf5 N-terminal domain-like 42 136 IPR037264 -
Spst8g01862 717 ProSiteProfiles Trp-Asp (WD) repeats profile. 396 428 IPR001680 GO:0005515
Spst8g01862 717 Gene3D - 225 539 IPR015943 GO:0005515
Spst8g01862 717 ProSitePatterns Trp-Asp (WD) repeats signature. 565 579 IPR019775 -
Spst8g01862 717 ProSiteProfiles Trp-Asp (WD) repeats profile. 588 629 IPR001680 GO:0005515
Spst8g01862 717 Gene3D TFIID subunit TAF5, NTD2 domain 29 101 IPR037264 -
Spst8g01862 717 ProSitePatterns Trp-Asp (WD) repeats signature. 607 621 IPR019775 -
Spst8g01862 717 ProSiteProfiles Trp-Asp (WD) repeats profile. 326 367 IPR001680 GO:0005515
Spst8g01862 717 ProSiteProfiles Trp-Asp (WD) repeats profile. 438 479 IPR001680 GO:0005515
Spst8g01862 717 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 105 711 - -
Spst8g01862 717 Pfam WD domain, G-beta repeat 435 470 IPR001680 GO:0005515
Spst8g01862 717 Pfam WD domain, G-beta repeat 624 662 IPR001680 GO:0005515
Spst8g01862 717 Pfam WD domain, G-beta repeat 582 620 IPR001680 GO:0005515
Spst8g01862 717 Pfam WD domain, G-beta repeat 394 428 IPR001680 GO:0005515
Spst8g01862 717 Pfam WD domain, G-beta repeat 554 578 IPR001680 GO:0005515
Spst8g01862 717 Pfam WD domain, G-beta repeat 328 358 IPR001680 GO:0005515
Spst8g01862 717 MobiDBLite consensus disorder prediction 225 285 - -
Spst8g01862 717 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 554 583 - -
Spst8g01862 717 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 438 472 - -
Spst8g01862 717 PRINTS G protein beta WD-40 repeat signature 565 579 IPR020472 -
Spst8g01862 717 PRINTS G protein beta WD-40 repeat signature 415 429 IPR020472 -
Spst8g01862 717 PRINTS G protein beta WD-40 repeat signature 649 663 IPR020472 -
Spst8g01862 717 Gene3D - 540 626 IPR015943 GO:0005515
Spst8g01862 717 ProSiteProfiles Trp-Asp (WD) repeats profile. 630 671 IPR001680 GO:0005515
Spst8g01862 717 SMART WD40_4 319 358 IPR001680 GO:0005515
Spst8g01862 717 SMART WD40_4 623 662 IPR001680 GO:0005515
Spst8g01862 717 SMART WD40_4 541 578 IPR001680 GO:0005515
Spst8g01862 717 SMART WD40_4 388 428 IPR001680 GO:0005515
Spst8g01862 717 SMART WD40_4 581 620 IPR001680 GO:0005515
Spst8g01862 717 SMART WD40_4 431 470 IPR001680 GO:0005515
Spst8g01862 717 ProSitePatterns Trp-Asp (WD) repeats signature. 649 663 IPR019775 -
Spst8g01862 717 Pfam WD40 associated region in TFIID subunit, NTD2 domain 48 98 IPR007582 -
Spst8g01862 717 CDD WD40 396 716 - -
Spst8g01862 717 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 396 428 - -
Spst8g01862 717 MobiDBLite consensus disorder prediction 225 269 - -
Spst8g01862 717 ProSiteProfiles Trp-Asp (WD) repeats profile. 554 587 IPR001680 GO:0005515
Spst8g01862 717 Gene3D - 627 717 IPR015943 GO:0005515
Spst8g01862 717 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 630 666 - -
Spst8g01862 717 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 588 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01862 Spst-Chr8 22902851 22923316 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01862 556 715 Miscellaneous Gene Families AT5G08390 28.750 8.82e-17 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01862 K03130 - gmx:100790500 988.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01862 8 22902851 22923316 Spst9g00713 9 6095793 6105615 PCT