Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00277 ATGGATCAGCACAAACTATCACTTCAACTTTTACTAACCCTTCATCTATTCGCATCAGGTGTATTATCAACAACAACGTTCACAGTGGTTAACAAATGCGACTACACAGTGTGGCCAGGCATTCTCTCTAACGCAGGAATCGCGCCGCTTACAACAACCGGTTTCGTTCTCCACACCGGTGAGTCAAAAACCGTAACCGCTCCAACCTCTTGGGGTGGCCGTTTCTGGGGCCGCACTCTTTGCACGCAAGACTCCGCCGGAAAATTCTCCTGCCTCACCGGAGATTGCGGCTCCGGCAAGCTCGACTGTGCCGGCAACGGCGCCACGCCACCGGCGACCTTGGCCGAGTTCACTCTCAATGGAAACGGAGGCCTCGATTTCTTCGACGTGAGCCTCGTGGACGGTTACAACGTGCCGATGCTGGTGGCTCCCCAGGGTGGCTCAGGTGATAACTGCACTCTTACAGGGTGCGTTGGGGACCTGAACGGCGCGTGTCCTTCGGAGCTTAGGGTTACAAACGTGGATGGAAAACAGAGCGTGGCGTGTAAGAGCGCGTGTGAGGCGTTCGGGTCCCCGCAGTATTGCTGCAAAGGCGCGTTTGGGTCGCCAAACACTTGCAAGCCTTCGGCTTACTCGCAGATTTTTAAGAACGCTTGCCCACGCGCCTACAGCTACGCGTACGATGACAAGACCAGCACTTTTACGTGCGCTTCTTCGACGGATTACACCATCACTTTTTGCCCTTCCCCTAACGACAATCCCAGTCAGAAATCGTGGCAGGGGCAAAACCCGAAATCAGATAGCGGTAGTTCTTCTTCTGAGTCGCCGCCGCAGCTCAATAATGGCACAATGGTGTATGTTGGTGCCATGGATGAAAGTGAATTATCGTGGTCGGCAGGTACCCATGTGACTGTGAAGGAATCTCAAGCCATTGCTAGTTTTGTCAGTATCACCATTGCTCTTTGGGTCTTGAGCCAACTATGGTAA 987 0.535 MDQHKLSLQLLLTLHLFASGVLSTTTFTVVNKCDYTVWPGILSNAGIAPLTTTGFVLHTGESKTVTAPTSWGGRFWGRTLCTQDSAGKFSCLTGDCGSGKLDCAGNGATPPATLAEFTLNGNGGLDFFDVSLVDGYNVPMLVAPQGGSGDNCTLTGCVGDLNGACPSELRVTNVDGKQSVACKSACEAFGSPQYCCKGAFGSPNTCKPSAYSQIFKNACPRAYSYAYDDKTSTFTCASSTDYTITFCPSPNDNPSQKSWQGQNPKSDSGSSSSESPPQLNNGTMVYVGAMDESELSWSAGTHVTVKESQAIASFVSITIALWVLSQLW 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00277 328 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Spst9g00277 328 PRINTS Pathogenesis-related protein signature 238 247 IPR001938 -
Spst9g00277 328 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Spst9g00277 328 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Spst9g00277 328 SMART tha2 27 248 IPR001938 -
Spst9g00277 328 CDD TLP-PA 26 247 - -
Spst9g00277 328 MobiDBLite consensus disorder prediction 252 282 - -
Spst9g00277 328 FunFam THAUMATIN-LIKE PROTEIN 1 25 248 - -
Spst9g00277 328 MobiDBLite consensus disorder prediction 252 283 - -
Spst9g00277 328 SUPERFAMILY Osmotin, thaumatin-like protein 25 249 IPR037176 -
Spst9g00277 328 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
Spst9g00277 328 PANTHER OS03G0233200 PROTEIN 15 248 IPR001938 -
Spst9g00277 328 Gene3D Thaumatin 25 248 IPR037176 -
Spst9g00277 328 ProSiteProfiles Thaumatin family profile. 24 248 IPR001938 -
Spst9g00277 328 Pfam Thaumatin family 31 248 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00277 Spst-Chr9 2633758 2636208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00277 6 266 Receptor kinase-like Gene Family AT5G38280 52.256 6.16e-94 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00277 - - gmx:100780102 562.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00277 9 2633758 2636208 Spst3g03787 3 87901625 87902528 ECH
Spst9g00277 9 2633758 2636208 Spst9g00277 9 2633758 2636208 ECH