Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01376 ATGCCACCTTCCCCTTCCTTCCCATCAGAGAACCGAACTAAATGGCGGAAGAAGCGCAGGCGAGAATCCCACAAGCGTCACCCCAAGCGCCACGACGAAGACGAGGATGACAATGATTCTGATGACGACCGTGACGACAACGACTCCGATGACCAGTTCCGCAGCCCTAATGCTCCGCCCAACCCCAACCCGCGCGTCGAGATCGAGGTCGTCTCGCGCGACGGAGTCCAGATTTCGCGCTTCCCACCAGCGATCAGGCGCGCTGTCACTCGCCCTCATGCTGCCGTGGCGGCGATTGCGGCGCTGGAGTCCGGCAGGGGACACTCACAGCACGGCGTTCCTGTTCTCGAGAATGTGTCGCAGGGTCAGCTTCAGGCTTCCTCTGTGGTGTCCGCGGATTGTCTCGGCGGGGGCTCGAGCTTCGTGGCTGCTCCACCGTCGGTTTTGAAAGGCTCTGGCGTTGTTAAGCGGTTCGGGAATAGGGTTCTTGTGGTCCCTATGCATTCAGATTGGTTTTCTCCAGCCTCAGTGCATCGACTTGAGAGACAAGCAGTGCCACATTTCTTCTCTGGAAAGTCGCCAGATCATACACCAGAAAAGTACATGGAATGTAGGAATTATATTGTTGCAAGATACATGGAGGACCCAGGGACGAAGATTACAGTCCCTAGTTGCCAGATGTTGTCCGTTGGTGTTGGTAATGAAGATTTAACTCGAATTGTCAGGTTTCTTGATCAATGGGGAATTATCAATTACTGTGCTCAGGGCCCAAGTCATCAGTATTTGAACAGTGAGACTTACCTGAAGGAGGACACAAGTGGTGCATTATGTGTGCCATCAGTGGCTTTGAGATCCATAGATAGTTTGATTGAGTTTGACAAACCCAAGTGTAAATTCAAAGCAGACGAAATTTATTCATCCCGAACAATGCACAATTCTGATATTTCCGATTTGGATGACACGATAAGAGAGCATCTAACGGAAAACCATTGCCATTATTGTTCACGTTCTCTGCCTGTTGTATACTACCAATCGCAAAAAGAGGTTGATACTTTACTCTGCACTGATTGCTTTCATGATGGGAGATTTGTCACTGGTCATTCTAGTATAGATTTTATAAGGGTGGATTCAACTACCGATTATGGTGATCCAGATGGAGACAGTTGGACTGATCAAGAGACTTTATTGCTGCTTGAAGCAGTGGAGATTTACAATGAGAATTGGAATGAAATTGCTGAGCATGTTGGTACCAAGACGAAAGCACAATGCATTCTTCATTTTCTCCGTCTACCTGTAGAAGATGGGAAGTTGGAAAACATCAATGTTTCAAGTTTATCCTTGTCATCCAATCTGAAGAATCAAGAGGGTAATAGAAGATTGCATTGTCACTCAAATGGGGATTCCGCAGGACCCGTTCATACGAACCAAGATTCTGATGGCAGGCTTCCCTTCGCAAATTCTGGAAATCCAGTTATGGCACTGGTTGCCTTTTTAGCGTCTGCTGTTGGACCAAGAGTAGCTGCAACATGTGCTCATGCAGCATTAGCTTCACTGTCAGAGAATAATTCAGGGAGCATGCCAAATATAGAAGCACTAGAAAATGATAACAGGACAAATTCAGAAAACATAAATAATAGAGATGATGGCCATCATGGAGTGGTTGCAAATTCAAATCAGAAAAATGAAGACAAGTCAAAAGTACCTGGTTCTCGTGCTCAAAATGAGGCTGGGTCGACCCTGCTCTCCTTTGAGAAAGTCAAAGATGCTGCTAAAGCAGGTCTCTCTGCTGCAGCAATGAAAGCTAAATTGTTTGCTGATCATGAAGAGCGAGAAATTCAGAGGCTATGTGCTAATATTGTTAATACTAAGCTGAAAAGATTGGAACTGAAGCTGAAGCAGTTTGCAGAAATTGAAACCCAGTTGATGAAAGAATGTGAACAAGTTGAGAAGCTGAGGCAGAGGTTTGCTTCTGAACGGTCCCAAGTTGTATCAGCACGTCTAGGAAATGGTGGAACCACTCCTCTGAATGTATCTGGTGTTGGTCCTTCCATGGTTAACAATAATAGCAACAGTAGGCAGCAAATGGTTTCTGCTTCTTCCTCACAGCCTAGCATCTCAGGTTATGGCAACAGCCAACCGGTTCATCCTCACATGTCCTTTGTCCCACGGCCTTCAATGTTTGGATTAGGACAAAGGTTGCCCCTTTCTATGATACAACAATCACAGTCAGCTTCAAATCCGATGTTCAATGGCCCCAGTAATGTGCAGCCTACTCCCAATCATTCGATGTCGAGGTCTGTGTCAAGAACTAACTCTGGTTTAGGTTAA 2328 0.4626 MPPSPSFPSENRTKWRKKRRRESHKRHPKRHDEDEDDNDSDDDRDDNDSDDQFRSPNAPPNPNPRVEIEVVSRDGVQISRFPPAIRRAVTRPHAAVAAIAALESGRGHSQHGVPVLENVSQGQLQASSVVSADCLGGGSSFVAAPPSVLKGSGVVKRFGNRVLVVPMHSDWFSPASVHRLERQAVPHFFSGKSPDHTPEKYMECRNYIVARYMEDPGTKITVPSCQMLSVGVGNEDLTRIVRFLDQWGIINYCAQGPSHQYLNSETYLKEDTSGALCVPSVALRSIDSLIEFDKPKCKFKADEIYSSRTMHNSDISDLDDTIREHLTENHCHYCSRSLPVVYYQSQKEVDTLLCTDCFHDGRFVTGHSSIDFIRVDSTTDYGDPDGDSWTDQETLLLLEAVEIYNENWNEIAEHVGTKTKAQCILHFLRLPVEDGKLENINVSSLSLSSNLKNQEGNRRLHCHSNGDSAGPVHTNQDSDGRLPFANSGNPVMALVAFLASAVGPRVAATCAHAALASLSENNSGSMPNIEALENDNRTNSENINNRDDGHHGVVANSNQKNEDKSKVPGSRAQNEAGSTLLSFEKVKDAAKAGLSAAAMKAKLFADHEEREIQRLCANIVNTKLKRLELKLKQFAEIETQLMKECEQVEKLRQRFASERSQVVSARLGNGGTTPLNVSGVGPSMVNNNSNSRQQMVSASSSQPSISGYGNSQPVHPHMSFVPRPSMFGLGQRLPLSMIQQSQSASNPMFNGPSNVQPTPNHSMSRSVSRTNSGLG 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01376 775 SMART sant 385 433 IPR001005 -
Spst8g01376 775 MobiDBLite consensus disorder prediction 687 712 - -
Spst8g01376 775 ProSiteProfiles Myb-like domain profile. 388 431 IPR001005 -
Spst8g01376 775 Coils Coil 624 654 - -
Spst8g01376 775 ProSiteProfiles SWIRM domain profile. 163 261 IPR007526 GO:0005515
Spst8g01376 775 FunFam SWI/SNF complex subunit SMARCC2 isoform C 385 435 - -
Spst8g01376 775 Pfam Myb-like DNA-binding domain 388 430 IPR001005 -
Spst8g01376 775 Gene3D - 385 435 - -
Spst8g01376 775 MobiDBLite consensus disorder prediction 1 66 - -
Spst8g01376 775 ProSiteProfiles SANT domain profile. 384 435 IPR017884 -
Spst8g01376 775 MobiDBLite consensus disorder prediction 538 576 - -
Spst8g01376 775 CDD SANT 388 430 IPR001005 -
Spst8g01376 775 MobiDBLite consensus disorder prediction 739 775 - -
Spst8g01376 775 ProSiteProfiles Zinc finger ZZ-type profile. 326 380 IPR000433 GO:0008270
Spst8g01376 775 MobiDBLite consensus disorder prediction 457 478 - -
Spst8g01376 775 Gene3D - 169 256 IPR036388 -
Spst8g01376 775 SUPERFAMILY Homeodomain-like 162 259 IPR009057 -
Spst8g01376 775 SUPERFAMILY Homeodomain-like 386 439 IPR009057 -
Spst8g01376 775 Pfam SWIRM-associated region 1 592 666 IPR032451 -
Spst8g01376 775 Pfam SWIRM domain 166 252 IPR007526 GO:0005515
Spst8g01376 775 PANTHER SWI/SNF COMPLEX-RELATED 127 666 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01376 Spst-Chr8 12881288 12886752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01376 331 427 EF-hand Containing Proteins AT3G07740 33.962 7.32e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01376 K11649 - gmx:100792929 1244.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01376 8 12881288 12886752 Spst8g01376 8 12881288 12886752 ECH
Spst8g01376 8 12881288 12886752 Spst9g01324 9 12874592 12880212 PCT