Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01272 ATGTCGAATGCTTGCTATGCCTTTAGTTTTACAGAAGCTAGGCTTGAGTCTTATTTTCTTAATTGTTGGGTATTTAATGCAGATCTTGAGCTTATGGGTTCTTTGTTTAGCATGGTTAATACCAAGACAAATCAAAGTGAATCTCATGAAATCTCTCCCAGTGAGACCTGTAAGAGACAAAAGATGTCACCTGCCACAGTTGTAGAATGTCCTAGACTAATTCCTAATCTCCCTGATGAGTTATCCCTTCAGATTATTGCTAGACTTCCAAGAATTTGTTACTACCGTATAAGGCTCGTGTCTAGGAGGTGGAAAGCAACTATCATGAGTTCTGAATTATATAAAGTAAGGAAAGAGCTTGGAACAACTGAAGAGTGGCTTTATCTGTTGACCAGGGTTGGAGAAAATAAACTCTTATGGCATGCTCTAGACCCCCATTCTCGAATTTGGCAGAGACTGCCTGTTATGCCCAGTTTTGTCGAAGAAGAAAATTCCCAAAAGGTTTCTTCCAGGCTTTGGATGTGGAATATGGTAGAAGGTATCAGAATTGCTGAAATTATTCGAGGTCTGCTTGGACAGAAGGATGCATTGGATGACATGCCTTTTTGCGGTTGTTCTTTTGGAGCTGTTGATGGATGTCTTTATGTTCTAGGTGGATTCTCTAAATCATCAACTATGAAATGTGTTTGGCGATTTGATCCGATGCAAAATGTGTGGAGGAAGGTTAATTCTATGTCTACAGGTAGGGCATATTGCAAGACAAGCATCTTAAATAACAAGCTTTATGTTGTTGGAGGGGTTAGTCAAGGTCAAGCTGGACTGATTCCTCTTCAGTCTGCTGAAGTTTTTGACCCCTTCACGGAAACATGGTCTGATGTACCTAGTATGCCATTCTCAAGAGCGGGTGTCCTGCCCACAGCTTTTCTGGCTGACATGTTAAAGCCTATTGCCACCGGGTTAACCTCATACAAGGGAAGGTTATATGTTCCCCAAAGTTTGTATTCATGGCCCTTTTTTGTTGATGTTGGGGGAGAAATATATGATCCAGAAACAAATTCATGGATAGAAATGCCAAATGGAATGGGTGAAGGATGGCCAATTAAGCAGGCAGGAACAAAATTGAGTGTTGTAGTGAATGATGAACTGTATGCTTTTGATCCTTCAAATTCTGTGGATAATGGAAGGATCAAGGTATATGATCAAGGAGAGGATGTATGGAAAGTTGTTATTGGAAAAGTCCCTGTATATGACTTTACCGATTCAGAGTCTCCGTATCTATTAGCAGGTTTCCACGGAAAACTTCATTTCATTGCAAAAGATTCCAATCATGATATTGCTGTTCTGCAGGCTGTTCCATGCAGTAATTTGGATTCTTCACCATCAACCTCAACACCTCTATCACCCAAATCTATGCAGGACGAGTTGTTGCTAGATTCGGTTGCCGAAACAGATACAGTTGTTTGGATAGAAGTTGCCAGTAGGAGTTTTGGGCAGGCTGAACTGATCAATTGCCAAGTTATTGATATCTAA 1530 0.4065 MSNACYAFSFTEARLESYFLNCWVFNADLELMGSLFSMVNTKTNQSESHEISPSETCKRQKMSPATVVECPRLIPNLPDELSLQIIARLPRICYYRIRLVSRRWKATIMSSELYKVRKELGTTEEWLYLLTRVGENKLLWHALDPHSRIWQRLPVMPSFVEEENSQKVSSRLWMWNMVEGIRIAEIIRGLLGQKDALDDMPFCGCSFGAVDGCLYVLGGFSKSSTMKCVWRFDPMQNVWRKVNSMSTGRAYCKTSILNNKLYVVGGVSQGQAGLIPLQSAEVFDPFTETWSDVPSMPFSRAGVLPTAFLADMLKPIATGLTSYKGRLYVPQSLYSWPFFVDVGGEIYDPETNSWIEMPNGMGEGWPIKQAGTKLSVVVNDELYAFDPSNSVDNGRIKVYDQGEDVWKVVIGKVPVYDFTDSESPYLLAGFHGKLHFIAKDSNHDIAVLQAVPCSNLDSSPSTSTPLSPKSMQDELLLDSVAETDTVVWIEVASRSFGQAELINCQVIDI 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01272 509 CDD F-box_AtAFR-like 73 117 - -
Spst8g01272 509 Gene3D - 111 414 IPR015915 GO:0005515
Spst8g01272 509 SMART kelc_smart 260 310 IPR006652 GO:0005515
Spst8g01272 509 SMART kelc_smart 213 259 IPR006652 GO:0005515
Spst8g01272 509 Pfam F-box-like 74 115 IPR001810 GO:0005515
Spst8g01272 509 ProSiteProfiles F-box domain profile. 71 117 IPR001810 GO:0005515
Spst8g01272 509 SUPERFAMILY F-box domain 73 116 IPR036047 GO:0005515
Spst8g01272 509 PANTHER OS02G0202900 PROTEIN 40 508 IPR045887 -
Spst8g01272 509 SMART fbox_2 77 117 IPR001810 GO:0005515
Spst8g01272 509 Pfam Kelch motif 249 297 IPR006652 GO:0005515
Spst8g01272 509 Pfam Kelch motif 201 246 IPR006652 GO:0005515
Spst8g01272 509 SUPERFAMILY Kelch motif 129 415 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01272 Spst-Chr8 11822082 11823611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01272 77 295 Miscellaneous Gene Families AT4G33900 25.664 3.87e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01272 - - var:108338547 901.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01272 8 11822082 11823611 Spst8g01272 8 11822082 11823611 ECH
Spst8g01272 8 11822082 11823611 Spst9g01220 9 11531656 11533086 PCT