Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01187 ATGACCTTTGTGCCGGAAAGAAATCATAGAAAAGCGAGTTTTTTGAACACTCTCCACCTTTTGCTCCTTAACGCAATGTCCATCCGGAAGACCCTCTCAAATCTACTACACACCTTCAACGACAAAGCCTCAGTGATCGCAGCATCAATTTCACTCAAGCGCCATGTGTCCTCCGTCCGCATCTATGTGCTTCGCGCCACCACTCACCGCCTCGCCGCTCCTCCGTCAGAGTCCCAAATCGCTGCCGTTCTCTCCGCAGGCCGTGGCTCTTATCTCCTGCCTCGCACCTGCATAGAGGCCATCATGGACCGCCTTCACAGAACCCGAAGCGCCTCGGTGGCACTGAAATGCCTCTTCATTCTCCACAACATAGTATCTGAGGGACCCTTAATGCTAAAGGACAACCTCTCCCACTACCCTTCGCGCGGAGGAAACAACGCCCTTAACCTCGTCAGCTTCCGCGACGAAACAGACATGGAATCACTGCAGCTCAGCTCGTGGGTTCGATGGTACGCCAATGTTCTGGAACATGTCTTGACGGTTTCTCGTGTTTTGGGTTATTATCTGATAAAGGATGGCGTCCAACGAGAGTTTACGAGGGTGTCCAGTGTTGAATTGTTATGTGAATTACGAGGATTAGTCGATTTCGTGGAGCAGGTGAGTCACGCGCCTGAGTCACTGCACCTTCAGAGGATCGATTTGGTGTATGGCGTTGTGAGATTGGTGCGAGATGATTACGGACGCGTGCAGGGCGAGATTTCTCGGCGTGTGGAGGAGATTGAGAGGAGGGTGGTGGATTTGGGTGTGGATGAGTTAAGGGAGTTGGTGTGGTGTTTGAAGAGATTGGAGGAGTGCAGGGAAAGGTTGGTGGTTTTGTTTGTGAATAGAAAGAAAAACGGTGCGTTTTGGGATTTGATTGGTGGGGTTAAGAATAAAGGAGTGGTGGTGATGGAGGATATGGAGGGGAAGTGGTTGACGGTGGTGAAGGGTAAGAACGAGTTGACTGAGTCGATGAGCTTCTCCAACCCGTTTCTCGAGCCTGGAGAAATTTTATATTCCGGTCCCACAGGGTGGTGTGTGGCCACGTGTCAACTGACTGTTCCGCGGTTGGGATGA 1116 0.5143 MTFVPERNHRKASFLNTLHLLLLNAMSIRKTLSNLLHTFNDKASVIAASISLKRHVSSVRIYVLRATTHRLAAPPSESQIAAVLSAGRGSYLLPRTCIEAIMDRLHRTRSASVALKCLFILHNIVSEGPLMLKDNLSHYPSRGGNNALNLVSFRDETDMESLQLSSWVRWYANVLEHVLTVSRVLGYYLIKDGVQREFTRVSSVELLCELRGLVDFVEQVSHAPESLHLQRIDLVYGVVRLVRDDYGRVQGEISRRVEEIERRVVDLGVDELRELVWCLKRLEECRERLVVLFVNRKKNGAFWDLIGGVKNKGVVVMEDMEGKWLTVVKGKNELTESMSFSNPFLEPGEILYSGPTGWCVATCQLTVPRLG 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01187 371 FunFam Putative clathrin assembly protein At4g40080 31 188 - -
Spst8g01187 371 Pfam ANTH domain 62 184 IPR011417 GO:0005543
Spst8g01187 371 PANTHER CLATHRIN ASSEMBLY PROTEIN 35 320 IPR045192 GO:0048268|GO:0072583
Spst8g01187 371 Gene3D - 30 188 IPR008942 -
Spst8g01187 371 CDD ANTH_N_AP180_plant 60 182 - -
Spst8g01187 371 SUPERFAMILY ENTH/VHS domain 59 187 IPR008942 -
Spst8g01187 371 ProSiteProfiles ENTH domain profile. 51 189 IPR013809 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01187 Spst-Chr8 10856242 10857357 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01187 - - gmx:100817573 500.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01187 8 10856242 10857357 Spst8g01187 8 10856242 10857357 ECH
Spst8g01187 8 10856242 10857357 Spst9g01134 9 10388043 10389068 PCT