Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00993 ATGGCAGCAATAGGTAATATGCACCGGGGCTATCCAACAGAAACATTAGCACGGTTTCTCAAAGCAAGGGACGGGAATGTTGTCAAAGCACATAAAATGTTAATTGATTGTTTACAATGGAGAGTGGAAAATGAGATTGACAATATTTTAGCGACTTTTGCGAAATTCTCAACTTGTGGGAATGTCTGGTTTCACAAAGGAGGTATTTTTGCTTTAGATAGATCTCTCATTATTGTTGGTGTTGGGCTCAGCACATTTGATCAAGTGTTTGACAAATACTATGTACAGTCGCACATCCAAATGAATGAATATAGGGATCGAGTGATCATGCCAACAGCTACAAAGAATCATGGACGATACATTGATACTTGTGTGAAAGTCATGGATATGACTGGTTTAAAACTCTCAGCGCTGAACCAATTGAAGCTTTTGACTGCTATAACTACAATAGATGACTTGAACTATCCAGAAAAGACTGACGCATATTACATAGTTAATGTTCCATATGTATTTTCAGCTTGTTGGAAGGTTGTAAAGCCTCTTTTGCAAGAAAGAACAAGGAAGAAAGTCCACGTACTGAAAGGTTGTGGCATGGAGGAATTACTGAAGATTTGTTGTAACTGTGAGGGGTTTAACATACTAAACCATGTTTTCAAAACTTGTGAACAGGTAATGGACTATGCATCCCTCCCACATTTTTGCAGAAAGGAGGATTCCAGGGTGCCCCGGCAACATACAGCTGGAAATACTGAAAATTGTTTCTCTTTTGATCATGTCTTCCATAAAGAACTCTATAATTACATCAAGCAGAAAGCTATACTCATAGAGTCCATATCACAGGATTCTTTCCATGTAGATTTACCGGAGCCAGACCCAGATGATGCCAAAATTGCCAAGACTATAGAAACTGAGTTCCACAAACTGGAGAGTCAGAATGGCCTTACCAACTGA 951 0.3901 MAAIGNMHRGYPTETLARFLKARDGNVVKAHKMLIDCLQWRVENEIDNILATFAKFSTCGNVWFHKGGIFALDRSLIIVGVGLSTFDQVFDKYYVQSHIQMNEYRDRVIMPTATKNHGRYIDTCVKVMDMTGLKLSALNQLKLLTAITTIDDLNYPEKTDAYYIVNVPYVFSACWKVVKPLLQERTRKKVHVLKGCGMEELLKICCNCEGFNILNHVFKTCEQVMDYASLPHFCRKEDSRVPRQHTAGNTENCFSFDHVFHKELYNYIKQKAILIESISQDSFHVDLPEPDPDDAKIAKTIETEFHKLESQNGLTN 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00993 316 SUPERFAMILY CRAL/TRIO domain 74 204 IPR036865 -
Spst8g00993 316 Gene3D - 4 42 - -
Spst8g00993 316 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 94 204 IPR001251 -
Spst8g00993 316 SMART CRAL_TRIO_N_2 12 37 IPR011074 -
Spst8g00993 316 SMART sec14_4 56 216 IPR001251 -
Spst8g00993 316 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN 4 315 - -
Spst8g00993 316 SUPERFAMILY CRAL/TRIO N-terminal domain 12 52 IPR036273 -
Spst8g00993 316 Gene3D - 43 210 IPR036865 -
Spst8g00993 316 CDD SEC14 74 204 IPR001251 -
Spst8g00993 316 Pfam CRAL/TRIO domain 115 198 IPR001251 -
Spst8g00993 316 Pfam CRAL/TRIO, N-terminal domain 12 36 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00993 Spst-Chr8 8642050 8646462 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00993 6 308 Acyl Lipid Metabolism Gene Families AT1G55840 55.696 9.36e-124 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00993 K26544 - gmx:100815791 462.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00993 8 8642050 8646462 Spst8g00993 8 8642050 8646462 ECH
Spst6g01890 6 18097621 18101033 Spst8g00993 8 8642050 8646462 PCT