Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01890 ATGGGTGGTGGAAATCAAGAGGCTCTCAAGCAGTTGAAGTCCCTGATGGAAAATGTGGATGAGCAGCTGAAGAACACATTCCAGAACATGCATCAAGATTATCCATCTGAAACATTAATACGGTTTCTTAAAGCAAGGGATTGGAATGTTTCCAAAGCCCATAAAATGCTAATTGATTGTTTAAACTGGAGAGTGGAAAATGAGATTGACAAAGTTTTAACGAAGCCTATTCCTGCGGATTTGTACAGAGCTGTGAGGGATTCTCAACTCATAGGAATGTCTGGTTACTCAAAGGAGGGTTTACCTGTCATTGCTGTTGGTGTTGGACAAAGTACATATGATAAAGCATCTGACAAATACTATATACAGTCACACATTCAAATTAATGAATACAGGGATCGAGTTATATTGCCAAAAGCTACGAAGAAGAATGAACGATACATTGGCACCTGTGTGAAAGTCTTGGATATGACTGGTTTAAAGTTTTCAGCCCTGAACCAATTGAGGTTGTTGACTGCTATATCCACAATAGATGACTTGAACTACCCAGAAAAGACAGACACATATTATATTGTTAATGCACCTTATGTATTCTCTGCATGTTGGAAGGTGGTAAAACCTCTTTTGCAAGAAAGAACAAGGAGGAAAATCCAGGTGCTGCAAGGTTGTGGGAAGGAGGAATTACTGAAGGTAATGGACTATGCATCCCTCCCACACTTCTGCAGAAAAGAAGATTCCAAGTCATCCAAACATAATGCATCAGGAAACACTGAAAACTGTTTCTCCTTTAATCATGTTTTCCACCAACAACTCTACAATCACATCAAGCATCAAGCTATCATTATGGAGTCAATCTCATCACCAATCAGACAAGGGTCTTTCTATGTTGACATACCAGAGCCAGACCCGGATGATGCCAAAATAGCCAAAACCATAGAAACTGAGTTCCACAAATTGGAGAATCAAAAGAATGGTTTTACCAACTCACGAAATGGTGTTACAGTCAATGGCCATTGA 1017 0.3953 MGGGNQEALKQLKSLMENVDEQLKNTFQNMHQDYPSETLIRFLKARDWNVSKAHKMLIDCLNWRVENEIDKVLTKPIPADLYRAVRDSQLIGMSGYSKEGLPVIAVGVGQSTYDKASDKYYIQSHIQINEYRDRVILPKATKKNERYIGTCVKVLDMTGLKFSALNQLRLLTAISTIDDLNYPEKTDTYYIVNAPYVFSACWKVVKPLLQERTRRKIQVLQGCGKEELLKVMDYASLPHFCRKEDSKSSKHNASGNTENCFSFNHVFHQQLYNHIKHQAIIMESISSPIRQGSFYVDIPEPDPDDAKIAKTIETEFHKLENQKNGFTNSRNGVTVNGH 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01890 338 Coils Coil 5 29 - -
Spst6g01890 338 Pfam CRAL/TRIO domain 89 240 IPR001251 -
Spst6g01890 338 SUPERFAMILY CRAL/TRIO domain 80 240 IPR036865 -
Spst6g01890 338 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN 1 329 - -
Spst6g01890 338 SMART sec14_4 78 246 IPR001251 -
Spst6g01890 338 CDD SEC14 82 240 IPR001251 -
Spst6g01890 338 Pfam CRAL/TRIO, N-terminal domain 8 59 IPR011074 -
Spst6g01890 338 Gene3D - 4 279 IPR036865 -
Spst6g01890 338 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 78 249 IPR001251 -
Spst6g01890 338 SMART CRAL_TRIO_N_2 35 60 IPR011074 -
Spst6g01890 338 SUPERFAMILY CRAL/TRIO N-terminal domain 7 75 IPR036273 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01890 Spst-Chr6 18097621 18101033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01890 1 336 Acyl Lipid Metabolism Gene Families AT5G47730 64.392 3.09e-159 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01890 K26544 - gmx:100817955 619.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01890 6 18097621 18101033 Spst8g00993 8 8642050 8646462 PCT