Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00953 ATGGCGGGATTTGTTGGCAGTGACAAGATAAGAGCTATGGATATTTCTCACCGTACAAGTGTTGTCTTCGATAAAATTCATCAATTTGAGCCAGAGCTTGCTGGAAAGATAATTGGCTATCTCCTCCTGCAAGACCATGGAGAACTAGAAATGGCAAGTTTGGCTTCGTACCCGGACTATTTAATACGTGATGTGGTATGTCAGGCCAAAATGGAGCTCCAAAAGTTGGCTGCGAAACCAGATATGCTCCCAATTTCACTTATTGTCAACCCTCCCCTTCCTCATCCTCAACAAGGTTTAAGCCATTTATCAGTTATGTCTCCTAGAACTCCTACTTCACCAAACTTTCAGGTTCCTCCTCACTATTGGGATCCACAACCTGCTGGCAATATCAATTCAGACTTTATGGCAATGAATTACGTGTATTCTGTCAAGGAACTTCAGAAGCAGACACAATTGTGCAGCTTGGAGAATAGTATAGATGCGGTGAAGACTGGGACTGTAGGAGTTGCCAACGATTACTATGGAGATGCTTCTGCTAACAACCTGGGTGGAAAAGCAGCTGGGAGAAGGTTTTCTGACTTTCCAATGAAAGTCTGTCACTACTTCAACAAAGGATTCTGCAAGCATGGAACTAGCTGCAGATTCTATCATGGGCAAGTTGCCCCTGAGAATTTCTCTCAGACGTATGGATATGATGCTATTGGTGAGGATCAGGTGATTTCCCCAGGGTCACTAGCACAGCTAGAGTCAGAACTTGTTGAGCTGCTAAGATCAAGGGGCAGTCCAATATCGATTGCTTCTCTGCCAATGGCATACTCAGATAAATTTAATAAGGTACTGCAAGCAGAAGGTTATTTAACTGAAAGCCAGAGACATGGTAAATCTGGCTATAGTTTGACAAAGCTTCTTGCGCGACTGAAAAACAGTATTCGGCTAATAGGCAGTTACAGACCTCATGGGCAGCATTCAGTGGTTCTGGCAGACGATGCTCCCACACAAATGCAGAAGGGAGAGTTTGCTCGAAATATCAGTGCTTCACGACAAATATATCTCACGTTCCCGGCTGACAGCACTTTCACCGAGGATGATGTCTCAAACTACTTCACCACATTTGGGCCTGTTGCAGATGTCAGAATTCCAAACCAGCAGAGAAGGATGTTCGGATTTGTGACATTTGTTCATCCAGAAACTGTCAAAACTGTTTTGGATAAGGGAAATCCCCATTCTGTTCGGGGATCTCGTGTTCTTGTGAAACCTTACCGGGAGAAGGCAAAGGTTAATGAAAGGAAGTACGCAGATATTGAGCACACTGTTTGTTGTTCACCACACTATGTAGATACGAACTCTGAACTTAACTCAATTCCAAAAAGTTTTGGGAACCATAGATCCTTTAGGCGACAGCTAATTGAAGAGCAAGAGCAAGCCCTTGAACTTGAGAGAAGTCTTGCACAACTGCCGTTTTCCCCAAAACCTTTATCCAGCTCACATCATTTTGGCTTCTCCTTGAACGAGACAACAATTTCAGATGATAACTTCGATTTACAGACATCAGAAGAATCTTTCAGATTTCCACTGCATGGCAAATCCAGGCATACATACGGCAATTTCTCTCATGGGGAAAGCATTGAAGGACTCAATCTCCCGGACAGTCCATTCGCCTTTCCAATAAATAATGAGAAGTAA 1686 0.4348 MAGFVGSDKIRAMDISHRTSVVFDKIHQFEPELAGKIIGYLLLQDHGELEMASLASYPDYLIRDVVCQAKMELQKLAAKPDMLPISLIVNPPLPHPQQGLSHLSVMSPRTPTSPNFQVPPHYWDPQPAGNINSDFMAMNYVYSVKELQKQTQLCSLENSIDAVKTGTVGVANDYYGDASANNLGGKAAGRRFSDFPMKVCHYFNKGFCKHGTSCRFYHGQVAPENFSQTYGYDAIGEDQVISPGSLAQLESELVELLRSRGSPISIASLPMAYSDKFNKVLQAEGYLTESQRHGKSGYSLTKLLARLKNSIRLIGSYRPHGQHSVVLADDAPTQMQKGEFARNISASRQIYLTFPADSTFTEDDVSNYFTTFGPVADVRIPNQQRRMFGFVTFVHPETVKTVLDKGNPHSVRGSRVLVKPYREKAKVNERKYADIEHTVCCSPHYVDTNSELNSIPKSFGNHRSFRRQLIEEQEQALELERSLAQLPFSPKPLSSSHHFGFSLNETTISDDNFDLQTSEESFRFPLHGKSRHTYGNFSHGESIEGLNLPDSPFAFPINNEK 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00953 561 SUPERFAMILY RNA-binding domain, RBD 358 430 IPR035979 GO:0003676
Spst8g00953 561 Gene3D - 193 242 - -
Spst8g00953 561 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 359 415 IPR000504 GO:0003723
Spst8g00953 561 Gene3D - 348 429 IPR012677 -
Spst8g00953 561 Coils Coil 462 482 - -
Spst8g00953 561 SMART rrm1_1 349 419 IPR000504 GO:0003723
Spst8g00953 561 ProSiteProfiles OST-type HTH domain profile. 245 329 IPR025605 -
Spst8g00953 561 SMART c3hfinal6 194 220 IPR000571 GO:0046872
Spst8g00953 561 ProSiteProfiles Zinc finger C3H1-type profile. 194 221 IPR000571 GO:0046872
Spst8g00953 561 Pfam OST-HTH/LOTUS domain 245 324 IPR025605 -
Spst8g00953 561 SUPERFAMILY CCCH zinc finger 196 219 IPR036855 GO:0046872
Spst8g00953 561 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 13 557 - -
Spst8g00953 561 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 348 423 IPR000504 GO:0003723
Spst8g00953 561 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 197 220 IPR000571 GO:0046872
Spst8g00953 561 CDD RRM_AtC3H46_like 350 419 IPR034365 -
Spst8g00953 561 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 355 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00953 Spst-Chr8 8388354 8392715 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00953 - - gmx:100818984 827.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00953 8 8388354 8392715 Spst8g00953 8 8388354 8392715 ECH
Spst6g01946 6 19011478 19023788 Spst8g00953 8 8388354 8392715 PCT