Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01946 ATGGATAGTTCAGAATATTCAACCGGTATTGTCTTAGGGAAAATTCCTGAGAACACTTTAAATGTATTAGGACGTCGATTTGTGCAAGATCAATGTGACATGGCGAAATTGGCTTGTTTATCTGATCATTTAATTGATGAGGAGTTGCATAACAGAAACAAGTTTCAAAAGTCAACTGCTAGAACACCTAGTTATCCGACCTCATTTTCCTCAAACTTACAGGTCCAATCTCCACTTTGGGATAGCAATAACGAATATATGACAATGGGGTTTTTAGATTCTATCTCAGAACATCAAAGACAAGCCCCATTGTTCAATCGTGAGAATCATATTATAAATTCAGGGTCTGTTGGAACTTCGGGCACTGCAGGTACCGGGATTGCCAACGATTACTATGGATCAAATGGTAATTTGGCTGGAAAAACTGGTAGAAGGTTTGAATTTCCTGTCAAGACCTGTCACTATTTTAATAAAGGATTTTGTAAGCATGGAACTAGCTGTAGATATTATCATGGACAGAGTGTCCCTGATGGATTCTCTCATACGTATGGAAATGAAAATGTTAACGATGATCAGATAATTTCACCTGGGTCACTAGCACAACTAGAGTCAGAAATTGTTGAACTCCTAAAACTGAAAAAGGGTGGTTCTATATCAATTGCTTCACTTCCAATGGCATACCATGACAAGTATAAGAAGGTGCTGCAAGCAGATGGCTACCTCACTGAGAGCCAGAGACATGGTAAGTCTGGCTACAGCTTGACAAAGCTTCTTGCCCGGTTGAAAAATAGTATTCGGCTGATTGACAGGCCTCATGGGCAGCATTCGGTTGTTCTGGTGGAAGATGCTCCAAAGTACAATGGAAAGGTAGATTATGGTAAATACATCAGTGCCTCACGTCAAATATACCTGACATTTCCTGCTGACAGCACTTTTAGCGAGGCTGATGTTTCAAACTACTTCAGCACTTTTGGAAAAGTTGAAGATGTAAGGATTCCAAGCCAAGAAAGAAGGATGTTTGGATTTGTGACATTTGATGATCCTGAAACTGTTAAAGTAATTTTGGATAAGGGAAATCCCCATTATGTTTGTGAATCACGGGTTCTTGTGAAACCTTACAAGGAGAAGCCAAAACTTATGCTCAGGAAGCACTCACATAGAGTTGATCACCCGCAACCGCAACCGCAACCACACCCGCAACCGCACCCTGCTTATCACTCACCACATTACTTAGACTTTGAGACTGAACCCACCTCAAATTTTGTAGTTCCAAGAGGTTGCAGGAACTCTCGATTTCTTAGGAGGCTGCTCTTTGAACAGCAAGAGGAGGCCCTTGAATTTCAGAGAAGACGTTTTGCAGAGTTGCAATTGGCCCAAAATTCTTTTTCCACTTCACCCCATTTAGGCTTTAACATGGACGGATCAACAGTTTTAGATGATCGTTTCAATGTCCAGCCTGTTGAATCTTGCAATCATGTTCTGAATGACAAAGCCAGATACATGGATAACAATTACACTGATGAGGACAGTCTTCTCATAATTGATGAGGTCAATTATGAAATGGAATATTTCTTGTTATGTCATGTGGACCAAGTCCATGTGAATCCAGCACAAAGATTGGACTTTAATTCCCATGATATATACTATGAAGCTAAGATGTCAAACTATGATTGA 1674 0.4026 MDSSEYSTGIVLGKIPENTLNVLGRRFVQDQCDMAKLACLSDHLIDEELHNRNKFQKSTARTPSYPTSFSSNLQVQSPLWDSNNEYMTMGFLDSISEHQRQAPLFNRENHIINSGSVGTSGTAGTGIANDYYGSNGNLAGKTGRRFEFPVKTCHYFNKGFCKHGTSCRYYHGQSVPDGFSHTYGNENVNDDQIISPGSLAQLESEIVELLKLKKGGSISIASLPMAYHDKYKKVLQADGYLTESQRHGKSGYSLTKLLARLKNSIRLIDRPHGQHSVVLVEDAPKYNGKVDYGKYISASRQIYLTFPADSTFSEADVSNYFSTFGKVEDVRIPSQERRMFGFVTFDDPETVKVILDKGNPHYVCESRVLVKPYKEKPKLMLRKHSHRVDHPQPQPQPHPQPHPAYHSPHYLDFETEPTSNFVVPRGCRNSRFLRRLLFEQQEEALEFQRRRFAELQLAQNSFSTSPHLGFNMDGSTVLDDRFNVQPVESCNHVLNDKARYMDNNYTDEDSLLIIDEVNYEMEYFLLCHVDQVHVNPAQRLDFNSHDIYYEAKMSNYD 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01946 557 ProSiteProfiles OST-type HTH domain profile. 198 281 IPR025605 -
Spst6g01946 557 CDD RRM_AtC3H46_like 302 371 IPR034365 -
Spst6g01946 557 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 16 495 - -
Spst6g01946 557 Coils Coil 438 458 - -
Spst6g01946 557 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 312 359 IPR000504 GO:0003723
Spst6g01946 557 SUPERFAMILY RNA-binding domain, RBD 311 399 IPR035979 GO:0003676
Spst6g01946 557 MobiDBLite consensus disorder prediction 383 408 - -
Spst6g01946 557 Pfam OST-HTH/LOTUS domain 198 277 IPR025605 -
Spst6g01946 557 Gene3D - 304 378 IPR012677 -
Spst6g01946 557 Gene3D - 147 204 - -
Spst6g01946 557 ProSiteProfiles Zinc finger C3H1-type profile. 147 174 IPR000571 GO:0046872
Spst6g01946 557 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 300 376 IPR000504 GO:0003723
Spst6g01946 557 SMART rrm1_1 301 371 IPR000504 GO:0003723
Spst6g01946 557 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 307 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01946 Spst-Chr6 19011478 19023788 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01946 - - gmx:100806206 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01946 6 19011478 19023788 Spst6g01946 6 19011478 19023788 ECH
Spst6g01946 6 19011478 19023788 Spst8g00953 8 8388354 8392715 PCT