Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00929 ATGGCACCCTCATGTTTCCTTCTTTTATCCCTTCTGTTCCTTTCATCCTCTGCAAGTGGTGTTCTCCAACATCCTGAAGAGGGATTCATCTCTGTCACCATATCTGATAAGGGTCTTGATTTTGCCAAGGATATTCTGATAGACCAAGCTATTGCCTCTATTCTGCTGTCTGAACTGCCACAGATTGAGAAGAATGTCCAAGTTCCTCTTGTTGGAAAAGCCAAAGTTGTTCTTTCTGAAATCACTATCAATGATATCCAAGTAAATTCTTCATCTGTTAATACAGGAGAAACAGGCATTGCTCTTGTTGTTGCAGGTGCCACTGCTAACTTGAGTTTCAAGTGGAGGTACTCTGCCAGCAGTTGGTTAGTCCCAATTGGAATTTCGGATAGTGGAACCGCAACTGCAAAGGTTAATGATTTACAAGTTGGACTTACTGTGAATTTAACGAATCAAGAAGGAACTCTTAAGTTGCTTCTCCTGGATTCTGGATGTCATGTTAGAGATTTATCCATAAAGTTGCACGGTGGAGCAGCTTGGCTTTACCAAGTGCTAGTAGATGCTTTTGCAGGAAATATAGCATCTGCAGTTGAAGAGGCAATTTCTGAGAAAATAAATGAGGGGATATCAATTCTTGATGTTTTATTGCAATCTCTTCCAAAGACTATCCCATTAGACGAAACAGCTGCACTGAATGTTTCTTTCGTGGACAATCCTGTTGTAAGTGATTCTGCTATTGAATTAGAAATTAATGGTTTGTTCACAGGGAGGAATGAAGTTTTGGCACCTCGAGGTTACCACAGAGGTTCACACATTTCTGTTTCCCGCCGTGACCGTTCACCACAGATGATAACCATTTCATTACATGAAAATGTTTTCAAATCCGGTTCCTTGGTTTACTTCACTGCAGATACCATGCAGTGGACTGTTGATGAACTACCTGATCAGGACCTTCTGAACACTGCTGAATGGAGATTCCTTATTCCTCAATTATACAAGAAATATCCAAATGATGACATGAATCTTAATATCTATTTATCTTCTCCACCGGATATACAAGTGACAAACAAAGATGTTGGTGTCAAAATTTCCATAGATATAATAATTAATGTTCTAGAAACTGGTGAAGTCATACCTGTTGCGTGCATCTCGGTGGATTTTAGTGCATCTTGTGCTGCGGAGATCATAGGAAACAATCTTGCTGGTTGGCTTAAATTGAGAAAGTTTTCCGCATACTTGAAATGGAGCAAAATAGGGAAACTGCACATGAATCTGATTCAGTCTGTGACATCAGCCGTCCTCAAAACCGTCCTAGTACCATACCTGAACACACAGTTAATGAGGGGAATTCCATTGCCAATTCTTAATGATTTTGCTCTTGAGAATGCTCGTATATTGTATGCTCCCCCATGGATTACTGTGTGTAGTGATGTTTCTTTCTTCGGAGACCATTATCTCAAACAACTACCAGCTTATGTATCATAA 1485 0.3993 MAPSCFLLLSLLFLSSSASGVLQHPEEGFISVTISDKGLDFAKDILIDQAIASILLSELPQIEKNVQVPLVGKAKVVLSEITINDIQVNSSSVNTGETGIALVVAGATANLSFKWRYSASSWLVPIGISDSGTATAKVNDLQVGLTVNLTNQEGTLKLLLLDSGCHVRDLSIKLHGGAAWLYQVLVDAFAGNIASAVEEAISEKINEGISILDVLLQSLPKTIPLDETAALNVSFVDNPVVSDSAIELEINGLFTGRNEVLAPRGYHRGSHISVSRRDRSPQMITISLHENVFKSGSLVYFTADTMQWTVDELPDQDLLNTAEWRFLIPQLYKKYPNDDMNLNIYLSSPPDIQVTNKDVGVKISIDIIINVLETGEVIPVACISVDFSASCAAEIIGNNLAGWLKLRKFSAYLKWSKIGKLHMNLIQSVTSAVLKTVLVPYLNTQLMRGIPLPILNDFALENARILYAPPWITVCSDVSFFGDHYLKQLPAYVS 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00929 494 PANTHER OS06G0309200 PROTEIN 1 490 IPR045897 -
Spst8g00929 494 Pfam LBP / BPI / CETP family, C-terminal domain 278 465 IPR001124 GO:0008289
Spst8g00929 494 Gene3D - 37 217 - -
Spst8g00929 494 Gene3D - 31 465 - -
Spst8g00929 494 Pfam LBP / BPI / CETP family, N-terminal domain 38 210 IPR017942 GO:0008289
Spst8g00929 494 SMART bpi2_2 278 483 IPR001124 GO:0008289
Spst8g00929 494 SMART bpi1_3 34 259 IPR017942 GO:0008289
Spst8g00929 494 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 245 480 IPR017943 GO:0008289
Spst8g00929 494 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 31 242 IPR017943 GO:0008289
Spst8g00929 494 PIRSF Lipid_binding_protein 4 484 IPR030675 GO:0005615|GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00929 Spst-Chr8 8232144 8236033 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00929 K05399 - gmx:100804747 834.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00929 8 8232144 8236033 Spst8g00929 8 8232144 8236033 ECH
Spst6g01987 6 19581900 19586590 Spst8g00929 8 8232144 8236033 PCT