Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01987 ATGGCACCCTCTATTCTTTTCTCTCTGTTGTCCCTTCTGTTGGTTCCAACATGTGGTTATGTGCAACCCCTTGAAGAGGGTTTAATCTCTGGGGTCATATCTGACAAGGGTCTGGAATATGCCAAGGAGTTGCTGATAGAGAAGGGTATTGCTTCCATTGTTATGCTTCAGCTGCCAAAGATTGAGAATTCTGCCCAAGTTCCTCTTGTTGGGAATGCTAAAGTGGTTCTTTCTGACATCACAATTAACGATGTTCAAGTCAATTCTTCATCTGTTAAGACTGGAGAGAATGGAATTGTTATTGTTATTTCAGGTGCCATTGTTAATTTGAGTATGAGATGGAGGTACACTGTCAGCTCTTGGTTAATTCCAATTGGAATTTCGGATAAAGGAACTGCTATAGTGAAGGTTACAGGTATGCAAGTGGGGCTTACAGTAAATTTAAGGAACCAAGAAGGAACTCTTAAGTTGTCTCTCTTAGATTATGGATGTCATGTGGGAGACTTGTCTATAAAATTGGACGGAGGTGCATCTTGGCTTTACCAACTGCTAGTAGATGCTTTTGAAGGGAATATAGCCTCTGCCGTTGAAGAAGGCATTTCAGAGAAAATAAAAGAAGGGATAGCGAAGCTTGACAATTTTTTGGCATCTCTTCCAAAGCAGATCTCACTAGACCAAACTGCTACACTAAATGTTTCTTTTGTTGGCAATCCTGTGTTGAGCAGTTCCTCCATTGCAGTTGCAATTAGTGGTTTATTCACAGGGAAAAGTGAAGTTTTAGAACCTCAAGATTACCACCAGAAAGAATTGAAGATTTCTGCTGCCTGTGGTGGTTTACCAAAGATGATAAAAGTATCAATACATGAAAATGTGTTCAAATCTGCTTCCCAAGTTTACTACAATGCTGGTAAAATGCAATTGATTGTTGATAAACTACCTAATCAGGCCATATTGAACACTGCTGAATGGAGATTCATAGTTCCCCAATTATACAAGCGATATCCGAATGATGATATGCAGATTAATATCTCTGTATCTTCTCCACCAGTTATACAAGTGACATACCAAGATATTGGTGCAACTATTTTAGTAGATATAACAATCGATGTTCTGGAAGATTTTGAAGTCATACCTGTTGCATGCATCTCAGTGGAAATTAGTGCTTCATATGCTGTAGAAGTTGTAGGAAATGATATTATTGGTAGACTCACACTACAAGAATTTTCGGCATACTTGAAATGGAGCAAAATAGGGAAACTGCACATTCATCTGATTCAGTCATTAGTGTCAAGTCTCCTCAAAACTGTTGTTCTTCCATACCTGAATTTCAAATTAAAGAGAGGATTCCCATTACCAATTATTGATGGTTATGGCTTTCAGAATGCTAAAATCTTGTACAACCATCCATGGATTGCAGTGTGCAGTGATGTTTCCTTCTTAGAAGATTACTATTTTGGTCACCGATCATCTTCATCTTATGTTTCATAA 1488 0.3824 MAPSILFSLLSLLLVPTCGYVQPLEEGLISGVISDKGLEYAKELLIEKGIASIVMLQLPKIENSAQVPLVGNAKVVLSDITINDVQVNSSSVKTGENGIVIVISGAIVNLSMRWRYTVSSWLIPIGISDKGTAIVKVTGMQVGLTVNLRNQEGTLKLSLLDYGCHVGDLSIKLDGGASWLYQLLVDAFEGNIASAVEEGISEKIKEGIAKLDNFLASLPKQISLDQTATLNVSFVGNPVLSSSSIAVAISGLFTGKSEVLEPQDYHQKELKISAACGGLPKMIKVSIHENVFKSASQVYYNAGKMQLIVDKLPNQAILNTAEWRFIVPQLYKRYPNDDMQINISVSSPPVIQVTYQDIGATILVDITIDVLEDFEVIPVACISVEISASYAVEVVGNDIIGRLTLQEFSAYLKWSKIGKLHIHLIQSLVSSLLKTVVLPYLNFKLKRGFPLPIIDGYGFQNAKILYNHPWIAVCSDVSFLEDYYFGHRSSSSYVS 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01987 495 SMART bpi2_2 277 482 IPR001124 GO:0008289
Spst6g01987 495 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 33 241 IPR017943 GO:0008289
Spst6g01987 495 FunFam phospholipid transfer protein-like 36 216 - -
Spst6g01987 495 Pfam LBP / BPI / CETP family, N-terminal domain 37 209 IPR017942 GO:0008289
Spst6g01987 495 Pfam LBP / BPI / CETP family, C-terminal domain 269 467 IPR001124 GO:0008289
Spst6g01987 495 SMART bpi1_3 33 258 IPR017942 GO:0008289
Spst6g01987 495 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 244 479 IPR017943 GO:0008289
Spst6g01987 495 Gene3D - 36 216 - -
Spst6g01987 495 PANTHER OS06G0309200 PROTEIN 2 486 IPR045897 -
Spst6g01987 495 Gene3D - 32 465 - -
Spst6g01987 495 PIRSF Lipid_binding_protein 4 483 IPR030675 GO:0005615|GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01987 Spst-Chr6 19581900 19586590 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01987 K05399 - gmx:100815362 801.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01987 6 19581900 19586590 Spst6g01987 6 19581900 19586590 ECH
Spst6g01987 6 19581900 19586590 Spst8g00929 8 8232144 8236033 PCT