Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00880 ATGATGGGTCAGATCGTGCGGAGGAAGAAGAAGGGGCGTCCCTCCAAGACAGATCTAGCTCGCCGCTCCGGGGAATCTCCGGCCGCCGCACAGCCAGACCTCCGACGAAGCCGCCGCCGCCGGAATGTGCGCTACAACATCGACTACGATGACTACCTCGACGAGGAGGACGAAGAGGAGGACGAGGACGAGAGGAGGCGTGAGAAGAAGAAGCTCAAGCTCGTCGTGAAGCTCAACAACCACGAGGAGGAGGATGAGGACGAAGACGACGACAACACGCCGAGTCGCAGAGGGGCGCGTGGGTTACACGCACCGGATGAAAAGGGGGAGGAGGAGGAGGAAGAGGGCGAGGAGGAAGAGGAAGAAGAAGAGGAAGGGAATGAGGAGGAGGAGGAGCAGGAAGAAGAACGTGAGGCAAAGGGCAGAAAAGTGGATTCTAAAGGGCTCCACTCAGTTTCAGTGTTAGGAACTCCGTCGAAGCTTCCATCTGGGATTCCGTTGCCTGACAAAAGGACTCTGGAGTTGATCCTTGACAAGCTTCAGAAGAAGGACACATATGGTGTGTATGCGGAGCCGGTTGATCCAGAAGAGCTTCCTGATTATCATGATGTGATTGAGCATCCTATGGACTTTGCCACAGTGAGGAAGAAGTTGGCAAATGGATCCTATCCTTCCTTGGAACAATTTGAGAGTGATGTATCTTTGATTTGCTCGAATGCAATGCAATACAATGCAGCGGAGACCATATACCACAAACAGGCAAGATCCATACAAGAGCTAGCAAGGAAAAAGTTTGAAAAGTTACGGTTAGACTTTGATCGTTCTCAGAGTGAACTGAAGTCAGAACCAAAAACAAGATCAAATTCCCTGGTTAAGAAGCTAGCAAAGAAGCCACTGGGTCATGCTTCACAGGAACCTGTTGGCTCTGATTTTTCCTCAGGTGCAACCCTTGCTACTATTGGAGATGTACTTCCCACATCCCATCCAATGCAAGGTGTAGTATGTGAAAGGCCTGGCAATATTGATGGCCTTGTGGATGGAAATGCATTCATGATTGATGCAAATCAGGAGAAAGCAGAAGAATACATATCAGGGAGGGGTATGCTCTCCAGGTTGGGAAGGAAACCATCTGTGCAAGATATGGAACGTCGTGCAACTTATAATATGCCTAATCCACCAGTTACAAGACCAGATTCTGTATTTACGACATTTGAGGGTGAAGTGAAGCAGCTAGTTACTGTTGGACTACAAGCTGAACACTCCTATGCCAGGAGTTTGGCTCGATTTGCTGCAACACTAGGACCTACAGCTTGGAGAATCGCTTCCCAGAGGATTCAGCAGGCACTGCCACCTGGCTGTAAATTTGGTCGTGGTTGGGTTGGAGAATATGAACCACTTCCAACACCAGTATTAAAGCTTGATAATCTTGCCCAGCAGCAACCTAGTTTGGGGACTAAGTTGCAGTCTGCTACTGAATTAATGAAGGTTGACAAAAGTTGTAAGAATGTGGAATCCACCATAGAACATCCGGTTAATGGACCAATGCATGAGGGAAAACTGCCTTCAGTTTGTTCTAGTAATGGGCCTACATCAGACAGAAAATCTTCTTTATTAGGTTCTGCTGGACCAAGACCCAATTCTCATGTCAATCTCTTTTATCAGCAGTCTAACGTCCAAAGTAGGAACCTGAACAAGTCTGAGAACAAGGGTTTGAAACAAATGGAATTGAACTCTTTACCCCCGAGTGATCAGAATAATGCCAGTCTAGTTGCAAAGCTTACAAGTAATACTCCTGCACCTGTGTCTAAGCCCAGAGACATGGTACCAAGTAACATGACTATTTTACCGTCTATGCCTTTCAAGCAGCCAGATTCCAACGGAGTTGTTAGTGGAGAGTTGCCCAATGGAAAAGTTAGGAATCCTAGTTTAAATAGACGGATGCCTGGTCCATCATCTGAAAGCACATCAAATCAAACAGGCAGATCGGCTCCCTTTGTTGCACATGGGCAGGAGCAGACTCTTAGTGACCCAGTGCAGTTGATGAGGATGTTAGCTGAAAAGACACACAAGCAACAGACTTCCAGTTCATCAAATCATTCCCCTGCTGACACCCCACCAGTGACACCATCAGTTCCATCAGGACGGAGGGAGGATTCGAGCAATGCTTCAGCAGCAGCTGCCCGTGCATGGATGTCAGTTGGGGCAGCAGGTTTTAAACAAGGCCCTGAAAGTTCTAGCTCACCGAAAAATCAGATTTCTGCAGATTCATTGTACAACCCAGCACGAGAGTTCCATCAGCCCTTTTCCCGAATTAGGGGAGAGTTTCCACCGGGTGGAACACCGTTCCAGTCTGAGAACAATTTTCCATTTCAGGCACTTGTACCCCAACCTCAACCTATTCACCCAGTTGGTGCTTCACAGTTTCCAAACAGACCAATGGTTTTTCCTCAAGTAGCAGCTTCTGACCTATCAAGATTTCAATTACCACCTTGGGGGGGTATCCGTTCTCACAATCAACCAAGACAGAAACAGGAAACACTTCCTCCTGACTTGAACATTGGTTTCCAATCTCCTGGGTCTCCTGCAAAACAATCATCTGGAGTGCTGGTTGACTCTCAGCAGCCAGACCTTGCTTTGCAACTGTGA 2646 0.4777 MMGQIVRRKKKGRPSKTDLARRSGESPAAAQPDLRRSRRRRNVRYNIDYDDYLDEEDEEEDEDERRREKKKLKLVVKLNNHEEEDEDEDDDNTPSRRGARGLHAPDEKGEEEEEEGEEEEEEEEEGNEEEEEQEEEREAKGRKVDSKGLHSVSVLGTPSKLPSGIPLPDKRTLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIEHPMDFATVRKKLANGSYPSLEQFESDVSLICSNAMQYNAAETIYHKQARSIQELARKKFEKLRLDFDRSQSELKSEPKTRSNSLVKKLAKKPLGHASQEPVGSDFSSGATLATIGDVLPTSHPMQGVVCERPGNIDGLVDGNAFMIDANQEKAEEYISGRGMLSRLGRKPSVQDMERRATYNMPNPPVTRPDSVFTTFEGEVKQLVTVGLQAEHSYARSLARFAATLGPTAWRIASQRIQQALPPGCKFGRGWVGEYEPLPTPVLKLDNLAQQQPSLGTKLQSATELMKVDKSCKNVESTIEHPVNGPMHEGKLPSVCSSNGPTSDRKSSLLGSAGPRPNSHVNLFYQQSNVQSRNLNKSENKGLKQMELNSLPPSDQNNASLVAKLTSNTPAPVSKPRDMVPSNMTILPSMPFKQPDSNGVVSGELPNGKVRNPSLNRRMPGPSSESTSNQTGRSAPFVAHGQEQTLSDPVQLMRMLAEKTHKQQTSSSSNHSPADTPPVTPSVPSGRREDSSNASAAAARAWMSVGAAGFKQGPESSSSPKNQISADSLYNPAREFHQPFSRIRGEFPPGGTPFQSENNFPFQALVPQPQPIHPVGASQFPNRPMVFPQVAASDLSRFQLPPWGGIRSHNQPRQKQETLPPDLNIGFQSPGSPAKQSSGVLVDSQQPDLALQL 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00880 881 CDD Bromodomain 169 265 - -
Spst8g00880 881 MobiDBLite consensus disorder prediction 508 549 - -
Spst8g00880 881 MobiDBLite consensus disorder prediction 645 662 - -
Spst8g00880 881 SMART bromo_6 162 270 IPR001487 GO:0005515
Spst8g00880 881 Pfam Bromodomain 175 255 IPR001487 GO:0005515
Spst8g00880 881 Coils Coil 53 73 - -
Spst8g00880 881 ProSitePatterns Bromodomain signature. 187 243 IPR018359 -
Spst8g00880 881 MobiDBLite consensus disorder prediction 1 167 - -
Spst8g00880 881 PRINTS Bromodomain signature 214 232 IPR001487 GO:0005515
Spst8g00880 881 PRINTS Bromodomain signature 232 251 IPR001487 GO:0005515
Spst8g00880 881 PRINTS Bromodomain signature 198 214 IPR001487 GO:0005515
Spst8g00880 881 MobiDBLite consensus disorder prediction 92 107 - -
Spst8g00880 881 MobiDBLite consensus disorder prediction 523 549 - -
Spst8g00880 881 Coils Coil 109 140 - -
Spst8g00880 881 ProSiteProfiles Bromodomain profile. 181 251 IPR001487 GO:0005515
Spst8g00880 881 MobiDBLite consensus disorder prediction 829 881 - -
Spst8g00880 881 MobiDBLite consensus disorder prediction 686 704 - -
Spst8g00880 881 MobiDBLite consensus disorder prediction 686 726 - -
Spst8g00880 881 MobiDBLite consensus disorder prediction 1 16 - -
Spst8g00880 881 MobiDBLite consensus disorder prediction 108 135 - -
Spst8g00880 881 MobiDBLite consensus disorder prediction 63 81 - -
Spst8g00880 881 PANTHER BROMODOMAIN CONTAINING PROTEIN 7 880 - -
Spst8g00880 881 MobiDBLite consensus disorder prediction 837 881 - -
Spst8g00880 881 MobiDBLite consensus disorder prediction 618 662 - -
Spst8g00880 881 Gene3D - 102 289 IPR036427 GO:0005515
Spst8g00880 881 SUPERFAMILY Bromodomain 158 269 IPR036427 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00880 Spst-Chr8 7797878 7802589 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00880 K22184 - gmx:100799986 1010.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00880 8 7797878 7802589 Spst8g00880 8 7797878 7802589 ECH
Spst6g02021 6 20396527 20401612 Spst8g00880 8 7797878 7802589 PCT