Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02021 ATGGTTCAGATCGCGAGGAGGAAGAAGGGACGACCGTCGAAGGCGGATCTGGCACGCCGTTCCGACGAGTCTCCGGCCGCCTCGTTGCAGCCCGATCTCCGGCGAAGCCACCGGCGCCGGAGCGTAAGGTACAACATCATCGACTACGACGGAGACTACCTCGACGACGAGGAGGACGAGAGAAAGCGGGAGAAGAAGAAGCTCAAGCTCATGGCAAAGCTGAACCAGGACGGTGAAGAAGAAGAGCGTGAAGAAGAAATCGAGACGACGCCGGGCCGCACTCATGCTGATGCACCAGTGGAAGAATACGAAGACAAGGAAACAGAACAAGAGGAAGAGAACGAAAACGAACAAGAGGAAGAACACGAAGAAGATGAAGCCGGTGTGGTAAAGGGCAGAAAAGTGGAATCGAAAGGGCTCCACTCTGTTTCTGTTTCAGGAACTCCGGTGATTCTTCCATCTGGGATTCCGTTGCCTGATAAGAGGACCCTGGAATTGATCCTTGACAAACTTCAGAAGAAGGACACTTATGGTGTGTTTGCGGAGCCTGTTGATCCAGAAGAGCTTCCTGATTATCATGATGTGATAGACCATCCCATGGACTTTGCCACTGTGAGGAACAAGTTGGGAGCTGGATCTTATACTACCTTAGAACAATTTGAGAGTGATATATTTTTAATTTGCTCAAACGCAATGCAATACAATGCAGCGGATACTATATACCACAAACAGGCTCGATCAATACAAGAACTTGGACGGAAGAAGTTTGAGAAGTTAAGAATTGGATTTGAACGCTCTCAGATGGAGCAGAAATCAGAACAAAAAGCAGGATCCAATTATTTGGTTAAGAAGCAACCGAAGAAGCCACTGGTACGTGCCTCACAGGAACTTGTTGGCTCTGATTTCACTTCTGGAGCAACTCTTGCTACTATTATAGATGTACATCCAACTTCCCATCCGATGCAAGGTGGTAGATGTGAGAGGCCTGGCAATATTGATAGTATTTTGGAGGCAAATCCTTTCTGGATTGATGCAAATCAAGAGAAAGCTGAAGATGTTTTATCAGGGAAAGGCCTTCTCTCTAAGTGGGGAAGGAAGTCTGTTGTGCTTGATGAAAGTCGGCGTGCATCTTATAACATGTCCAATCAACCAATTGGACGATCAGAATCAATATTTATGACTTTTGACAGTGAAATGAAGCAGCTGGTTACTGTGGGACTTCATGCAGAATATTCATATGCTAGGAGTTTGGCTCGTTTTAGTGCATCTCTAGGACCTATTGCTTGGAAAATTGCTTCCCACAGGATTCAGCATGCACTGCCACCTGGCTTTAAATATGGTCGTGGCTGGGTTGGAGAGTATGAACAGCTTCCAACCCCAATATTAATGGTTAATAATCGTGACCAAAAAGGAACTAGTTTGGTCATGAAGTTGCATTCAACTATTGAATTACCACAGGGTGACAAAAATTGTAAGAATGTGGAACCAAGCATTGAACATCCTGTTAATGGACAGATGCTTGAGGGAAATCATCCTTTGAGGCCTGATTCCGAAGGAAAACCTTTCTTTGGTTCCGCTGGAGTGAGACTCAGTGCTCCTGCCAACATCCTAAATCAGGAGCAGAACACCCAATCCAGGAAAGTAGGCAAGTCTGAGAGTAAGGGTTTGAAACAAGTGGAGTTGAGTTCTTTACCCTCAAGTAAGCAGAATAATAATGGTCTGGTTGCAAAGTTTACAAGTAACACTCCTGCAGCAGAGTCCAAGACCAGAGAGATGGTGCTAGGAAACATGTTCAAGCATCCAGATACTAATGGAAAAATCATGAATACAAGTTTGAACAGACAGGTTACTGGTCCATCACCCGAAAGTACCTCAAACCAATCAAGCAGGGCAAGTCCTGTTGTCCATGAGCAGGAGCTGGGTATTAGTGACCCTGTTCAGTTGATGGGAAAGTTTTCTGAAAGGGCTCAAAAGCAACAGAATTCCAATCATTCGCTTGTTGATACTCCACCAGTGACATTATCTGATCCATCTGGACAGAGAGATGACTTAGGCAATGCTTCAGCAGCAGCAGCCCGAGCATGGATGTCTGTTGGGGCAGGAGGGTTTAAACAAGGACCGGATAATTCTAGTTCACCCAAAAATCAGATAACTGCAGATTCTTTGTACAACTCAACAAGAGAGTTCCATCAGCATATTTCAAGAATTCGAGGGGAGTTTCCCTCTGGTGGAATGCCTTTCCAACCATTTCAAGCACTTGCTCCTCAACCTAGTCACACAGGCACTGTTTTACAGTTTCCCAACCGGCCTATGGTTTTCCCTCAGTTGGCATCTGCTGACCAATCTAGATTTCAGACACAGTCCCCTTGGCGAGGTCTAAGTCCCCGTGGCCAGTCAAGGCAGAAACAGGAAACCCTTCCACCTGACTTGAATATTGGTTTTCAATCTCCAGGCTCACCTGCAAAACAATCTTCTGGTGTCCTTGTTGACTCACAACAACCAGACTTAGCTCTGCAACTATGA 2523 0.4578 MVQIARRKKGRPSKADLARRSDESPAASLQPDLRRSHRRRSVRYNIIDYDGDYLDDEEDERKREKKKLKLMAKLNQDGEEEEREEEIETTPGRTHADAPVEEYEDKETEQEEENENEQEEEHEEDEAGVVKGRKVESKGLHSVSVSGTPVILPSGIPLPDKRTLELILDKLQKKDTYGVFAEPVDPEELPDYHDVIDHPMDFATVRNKLGAGSYTTLEQFESDIFLICSNAMQYNAADTIYHKQARSIQELGRKKFEKLRIGFERSQMEQKSEQKAGSNYLVKKQPKKPLVRASQELVGSDFTSGATLATIIDVHPTSHPMQGGRCERPGNIDSILEANPFWIDANQEKAEDVLSGKGLLSKWGRKSVVLDESRRASYNMSNQPIGRSESIFMTFDSEMKQLVTVGLHAEYSYARSLARFSASLGPIAWKIASHRIQHALPPGFKYGRGWVGEYEQLPTPILMVNNRDQKGTSLVMKLHSTIELPQGDKNCKNVEPSIEHPVNGQMLEGNHPLRPDSEGKPFFGSAGVRLSAPANILNQEQNTQSRKVGKSESKGLKQVELSSLPSSKQNNNGLVAKFTSNTPAAESKTREMVLGNMFKHPDTNGKIMNTSLNRQVTGPSPESTSNQSSRASPVVHEQELGISDPVQLMGKFSERAQKQQNSNHSLVDTPPVTLSDPSGQRDDLGNASAAAARAWMSVGAGGFKQGPDNSSSPKNQITADSLYNSTREFHQHISRIRGEFPSGGMPFQPFQALAPQPSHTGTVLQFPNRPMVFPQLASADQSRFQTQSPWRGLSPRGQSRQKQETLPPDLNIGFQSPGSPAKQSSGVLVDSQQPDLALQL 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02021 840 MobiDBLite consensus disorder prediction 501 587 - -
Spst6g02021 840 MobiDBLite consensus disorder prediction 87 102 - -
Spst6g02021 840 ProSitePatterns Bromodomain signature. 178 234 IPR018359 -
Spst6g02021 840 Gene3D - 159 279 IPR036427 GO:0005515
Spst6g02021 840 SMART bromo_6 153 261 IPR001487 GO:0005515
Spst6g02021 840 MobiDBLite consensus disorder prediction 655 688 - -
Spst6g02021 840 MobiDBLite consensus disorder prediction 556 587 - -
Spst6g02021 840 MobiDBLite consensus disorder prediction 532 549 - -
Spst6g02021 840 ProSiteProfiles Bromodomain profile. 172 242 IPR001487 GO:0005515
Spst6g02021 840 MobiDBLite consensus disorder prediction 603 634 - -
Spst6g02021 840 MobiDBLite consensus disorder prediction 601 636 - -
Spst6g02021 840 MobiDBLite consensus disorder prediction 42 78 - -
Spst6g02021 840 MobiDBLite consensus disorder prediction 103 124 - -
Spst6g02021 840 SUPERFAMILY Bromodomain 156 259 IPR036427 GO:0005515
Spst6g02021 840 MobiDBLite consensus disorder prediction 655 682 - -
Spst6g02021 840 CDD Bromodomain 160 256 - -
Spst6g02021 840 PRINTS Bromodomain signature 205 223 IPR001487 GO:0005515
Spst6g02021 840 PRINTS Bromodomain signature 175 188 IPR001487 GO:0005515
Spst6g02021 840 PRINTS Bromodomain signature 189 205 IPR001487 GO:0005515
Spst6g02021 840 PRINTS Bromodomain signature 223 242 IPR001487 GO:0005515
Spst6g02021 840 Pfam Bromodomain 166 246 IPR001487 GO:0005515
Spst6g02021 840 Coils Coil 100 126 - -
Spst6g02021 840 MobiDBLite consensus disorder prediction 737 761 - -
Spst6g02021 840 MobiDBLite consensus disorder prediction 778 840 - -
Spst6g02021 840 PANTHER BROMODOMAIN CONTAINING PROTEIN 5 839 - -
Spst6g02021 840 MobiDBLite consensus disorder prediction 1 131 - -
Spst6g02021 840 Coils Coil 54 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02021 Spst-Chr6 20396527 20401612 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02021 K22184 - gmx:100799986 1243.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g02021 6 20396527 20401612 Spst6g02021 6 20396527 20401612 ECH
Spst6g02021 6 20396527 20401612 Spst8g00880 8 7797878 7802589 PCT