Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00371 ATGGCTCAATGCTCTAACAAGGATATTGACACAAGTGCATCTCAATTAAGTTGGTGGTACATAGATATATCTTATCAAGAACTCCAAAAGGCAAGTTACAAAGTGAAAAACACGGATGAAACTTTTGTTTGTCCATACTGTCCCGAGAGAAAGCAGGATTATAAGTACAGGGAACTTCTTAATCATGCTTCTGGGGTTGGTCGAAGTAGTTCAGAAAAGAGAACTGCAAAAGAGAAGGCTAACCATCTGGCTTTAATGAAATATTTAGAAAAGGATCTCGCTTATCTGGATGGCTCATCAAAACCTGCAGACAAAGGAGAAACTGTAATGCCTCAGTGGTCTAACAAGGATACTGACACATCTCAAATAAGTTGGTGGTATGTAGATACATCTTATGAAGAACTAAAAAAGGGAAGTTACAATGTGAAAACCTCAGATGTGACTTTCATTTGTCCATACTGTCCTAGGAGAAAACAGGATTATTTGTACAGGGAACTTCTAGAGCATGCTTATATGGTGGGTCGGAGTAGTTCTGAAAAGAAGAGTGCTAGGGAGAGAGCCAATCATCTTGCATTAGTGAAATATTTGGAAAATGATCTTATTATTGTTGATCGCTCATCAGATCCCGTTGATAAAGGTACCAAATTAACCTTAGGACAATCTGAAATGGCTCAATGCTCAAACAAGGAGATTGGTGTGAATGCATCTCCTCCAATAAATTGGTGGTATGTAGATAAGTTTTACAAAGAACTCATAAAGGGAAATCACTTTGTGCAAACCTCAAATGAGACTTTTTCTTGCCCATACTGTCCTAAAAAGAGAAAACAGGATTATGTGTACAGGGAACTTCTTGAACATGCTTCTGGGGTGGGTCAGAGTAATTCACAGAAGAGAAGTGTCAGGGAGAAAGCTACCCACCTGGCTTTAATGAAATATTTGAAAAATGATCTCATGCATATGAGTGATCCAGTAAAATCGGTAAATGAAGGTAACCCCCCTGTTACCAGAGTGGATCATATTAGTTCACAAGAAAGAAGTTTCAGAGAAGATGCTAGTCATTTGGTTTTAGCGAAATACTTAAAAAAGGATCTTATGCATGCGAGTGGTTCATCCTCAAAACATGTAAATGAAGGAACCATAATGATAAGCCCAGGAGAAACTGTAATTGGTTGCTGCTCTAACAAAGATAGCAATATGAGTTCATCTCAGATTGAGCAGTATGTAGATAAATTTTATGAAGAACTCAAAAAGGGAGGACACCATGTGAAAACCTCAGATCAGACTTTCACATGTCCATACTGCCCTAATAAAAAGATAAATCGGGAGTATGTGTACAGGGAAATACTTGAACATGCTTCTGGGGTGGGTCATAGTAAATCACAAAAAAGAAGTTTCAATGAAAGGGCCAATCATCTGGCTTTAGAAAAATATTTGAAAAAGGATCTCACGTATGTGGGTGCTTCATCTCCCTCAAGACCTATGGATCAAGGCACAATAACAACCAGCCCAGTAGAAATGGTGACGAATCATTATTCTCATAAAGATAATAATATAAGAGCAACTCAAATAAATGGGTGGCATGTACATAAATCTTATGAGGCACTCAAAAATGGAAGTCACATTGTGAAAACCTCCCAAATGGCTTACTCATGTCCGTACTGCCCTAATAAAAAAAGAAAGGGAGATTATGTGTACAGGGAAATCCTTGATCATGCTTCAGGGGTGGGTCAGAGCAGCTCACAAAAGAGAAGTGCCACTGAAAAGGCTAATCATCTGGCTTTAATGAAATATTTGAAAATAGATCTTATGGATGTGGATGGTACACCAAAAACTAGTACTTTTTTATATTCTGAGAAGCTGTTTGTGTGGCCGTGGACTGGGATCTTGGTTAATATTCCTACTAAACAGACAGAAGACGGGCGTTGTGTAGGGGAAAGTGGTTCCAAACTGAGGGATGAACACCGAAGTAGGGGATTTAATCCATGTAGAGTCCGCACTCTTCCGGATTTTTGGGGTCACTCTGGAACTGCAGTTATGGAATTCAATAAAGATTGGGTGGGCTTAGATAATGCTTTGGCATTTGAAAGAGCATACGAATTAGATCATCATGGAAAAAAAAACTGGTTTGCTAGTGCTGAGCAAAAGTCTGGTATTTATGCATGGATTGCTCGAGCTGATGACTACAAGATGAACAATATCGTTGGGGAACAACTGCGAAAGATGGGGGATATTCGAACAATATCTGAAATCATGAAAGAAGAAGCTCAAATACAGGATAAACTTGTGTCCAGCTTGAATAATACTCTTCAGGTCAAGAAGAAACGGTTAATGGAGATGGAGGCAATATACAATGAAACTTCACGTCGCATGGAAATTTTGATGGGGGAAATAGATAAACTCACTCAAGAACACAATCAAGAGATGAAGAAGATACAGTCAAGTGCAAGTCAGCACTTCCAGAATATTTTTAATGGTCATGAAAGGCTTAAGTTGCAACTGGAATCTCAGAAAAGAGAGTTTGAGTTGCGGAGAATTGAACTGGAAAAACGTGAAGCTCATAATGAAAGTGAAAGAAAGAAGTTGGAAGATGAGATTATGGAGAATGCATTGAAAAATAGCTCACTGGAAATGGCTGTTCTGGAGCAACAGAAAGCTGGTGAAAATGTTTGGAATCTGGCTGCAGATCAAAAGCGGCAAAAAGAACATCTTCATGCTAAAATAGTCAGGCTTGAAAAACAACTGGAAGTGAAACAAAAACTAGAATTGGAGATTCAACAACTGAAAGGAAAATTAAGTGTCATGCAGTACATCGAAGATGATGGAGACTCGGAAGTTCTGAATAAGGTAGATGTCCTACACAAAGATTTAAGAGAAAAGGAACAGTCACTACATGAGCTAGATGCCCTGAACCAAACACTGATTATCAAAGAGCGTCAGAGTAATGATGAGCTACAGGAAGCTCGTAAAGAATTGATTAATGGCATTAAAGAGGTATCTTGTCGTGCTAATGTTGGTGTGAAGAGAATGGGTGAGCTTGATATTAGACCATTCCTTGAAGCTATGAAGAAAAAATACAATGATGAGGATGCAGAAGATAGAGCTTCAGAACTGTGTTCATTGTGGGAAGAGTATATAAAGGACCCAGAGTGGCATCCATTTAAAATTACCATAATTGAAGGGAAACATAAGGAAATCATAGCCGATGAAGATGAAAAGTTGCAAGGACTGAAACATGAGATGGGTGAAGGAGTCTACAAAGCTGTGGTGACAGCTTTGACAGAGATCAATACATATAATCCAAGTGGGAGGTATACAACCTCTGAATTATGGAATTTTGAAGAGCGAAGGAGAGCTACTCTGCAAGAAGGAGTAAGATTGTTATTGATGCAATGGAAACTATCTAAACAGAAGAGGGGGATAGTGTGA 3426 0.3873 MAQCSNKDIDTSASQLSWWYIDISYQELQKASYKVKNTDETFVCPYCPERKQDYKYRELLNHASGVGRSSSEKRTAKEKANHLALMKYLEKDLAYLDGSSKPADKGETVMPQWSNKDTDTSQISWWYVDTSYEELKKGSYNVKTSDVTFICPYCPRRKQDYLYRELLEHAYMVGRSSSEKKSARERANHLALVKYLENDLIIVDRSSDPVDKGTKLTLGQSEMAQCSNKEIGVNASPPINWWYVDKFYKELIKGNHFVQTSNETFSCPYCPKKRKQDYVYRELLEHASGVGQSNSQKRSVREKATHLALMKYLKNDLMHMSDPVKSVNEGNPPVTRVDHISSQERSFREDASHLVLAKYLKKDLMHASGSSSKHVNEGTIMISPGETVIGCCSNKDSNMSSSQIEQYVDKFYEELKKGGHHVKTSDQTFTCPYCPNKKINREYVYREILEHASGVGHSKSQKRSFNERANHLALEKYLKKDLTYVGASSPSRPMDQGTITTSPVEMVTNHYSHKDNNIRATQINGWHVHKSYEALKNGSHIVKTSQMAYSCPYCPNKKRKGDYVYREILDHASGVGQSSSQKRSATEKANHLALMKYLKIDLMDVDGTPKTSTFLYSEKLFVWPWTGILVNIPTKQTEDGRCVGESGSKLRDEHRSRGFNPCRVRTLPDFWGHSGTAVMEFNKDWVGLDNALAFERAYELDHHGKKNWFASAEQKSGIYAWIARADDYKMNNIVGEQLRKMGDIRTISEIMKEEAQIQDKLVSSLNNTLQVKKKRLMEMEAIYNETSRRMEILMGEIDKLTQEHNQEMKKIQSSASQHFQNIFNGHERLKLQLESQKREFELRRIELEKREAHNESERKKLEDEIMENALKNSSLEMAVLEQQKAGENVWNLAADQKRQKEHLHAKIVRLEKQLEVKQKLELEIQQLKGKLSVMQYIEDDGDSEVLNKVDVLHKDLREKEQSLHELDALNQTLIIKERQSNDELQEARKELINGIKEVSCRANVGVKRMGELDIRPFLEAMKKKYNDEDAEDRASELCSLWEEYIKDPEWHPFKITIIEGKHKEIIADEDEKLQGLKHEMGEGVYKAVVTALTEINTYNPSGRYTTSELWNFEERRRATLQEGVRLLLMQWKLSKQKRGIV 1141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00371 1141 Pfam XS domain 618 729 IPR005380 GO:0031047
Spst8g00371 1141 PANTHER RIBONUCLEASE P SUBUNIT P38 510 1138 IPR045177 GO:0080188
Spst8g00371 1141 Coils Coil 830 864 - -
Spst8g00371 1141 Coils Coil 970 1001 - -
Spst8g00371 1141 CDD RRM_like_XS 621 728 IPR005380 GO:0031047
Spst8g00371 1141 Gene3D XS domain 615 784 IPR038588 -
Spst8g00371 1141 Coils Coil 783 810 - -
Spst8g00371 1141 Pfam XH domain 1007 1137 IPR005379 -
Spst8g00371 1141 Pfam XS zinc finger domain 151 193 IPR005381 GO:0031047
Spst8g00371 1141 Pfam XS zinc finger domain 551 594 IPR005381 GO:0031047
Spst8g00371 1141 Pfam XS zinc finger domain 267 309 IPR005381 GO:0031047
Spst8g00371 1141 Pfam XS zinc finger domain 431 474 IPR005381 GO:0031047
Spst8g00371 1141 Pfam XS zinc finger domain 44 85 IPR005381 GO:0031047
Spst8g00371 1141 Coils Coil 893 930 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00371 Spst-Chr8 3604440 3610872 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00371 - - gmx:100790814 1912.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00371 8 3604440 3610872 Spst8g00371 8 3604440 3610872 ECH
Spst8g00371 8 3604440 3610872 Spst1g02227 1 30749836 30759012 PCT