Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g01429 ATGAATCACTCCCGTCTGATTTCCGGCGGAGGATGGCTGCTTCGGCGACTGTGCACGGAGACTCAGAGTCCAGCGAAAAAGGAAAACCTCTATCGAATGTTATCGGCGCTGGACATGACTGGAGGTAGCGTGTTGGAAACTTTGGACAACTATATAAAGCAAGGCAAAGCCATAAGAAAAACGGAACTCGAAAGATGCGTGGAGCAGCTCCGAAAGTATCGCCAATTCCAGCATGCACTCGAGATAATAGAATGGATGGAGATGAGGAAAATTAACTTTTCCTGGAATAATTATGCAGTACAATTAGATCTCGTATCCAAGACCAAGGGGGTGGTTGCGGCTGAGAAATTTTTCAGTGGTCTTCCTCCTCCAGCCAAGAACAAGTATACGTATGGTGCTCTCTTGAACTGTTACTGCAAGGAAATGATGAAAGACAAGGCGTTGAGTCATTTTGAAAAAATGGATGAATTGGGTTATGTCACTTCTCTGGCTTTCAACAATTTGATGAGTCTGTATATGAGAATTGGTGAACCCCAGAAAGTGCCTGAACTGGTGGCGCTAATGAAGAGTAGAAGCGTTCCCTTTTCTTCATTCACGTATCATGTCTGGATGAACAGCTGCGCCTATTCGAACGATCTTGATGGGGTGGAGAGAGTCTATGAGGAGATGAAAACTAAAGATAAGGATAAAATTGGTTGGCAGACTTACAGCAACCTTGCTGCTATTTATGTAAAGGTTAAGGACTTTGAGAAGGCTGAAAGGATGCTTAAGATGCTGGAGAAACAAGTGAAGCCGCGGCAGCGTGATGCTTACCATTGCTTGCTTGGCCTTTATGCTGGGACTGGTAATCTTGAAGAAGTTCATAGAGTGTGGAATTCCCTCAAGTCTGTGTCCCCTGTGACCAATTTTAGCTATCTTGTTGTGCTTAGTACCCTCCGAAGGCTTAATGATATAGAGGGCTTAACAAAATGCTTTAAGGAGTGGGAAGCTAGTTGTGTGAGCTATGATGTGAGGTTAGTTGGTGTCTGTGTTAGTGCTTACTTGGGTCAGAACATGGTGGAAGAAGCTGCATTGGTGTTTGAGGGGGCTAGCAGGAGGAGCAAGGAGCCTTTGTTCAGGATTGAGGAAATGTTCATGATATATTTCTTGGAGAAACGTCAGTTGGATGCTGCTGTTAGGCACTTGAAGTCGGCGTTTTCAGAAGTCAAGGGTGATACTGAATGGCATCCTTCACCACGAGTTGCTGGGGCTTTTCTGAAGTACTACGAAGAAGAGACGGATGTGGATGCTGTTGATGAGTTGTGCAAGATTCTCAAGGCTAACAAGTTTGATGATTCCTGGACTAAAACTTGGATTGATGCGTTCAAATCGTCTGCTGAAACTGATCCAAGATTGAAGGAAGATGATCCTCAAGACTACCATGCGCAAGAGAACTACACATCGTGA 1446 0.4461 MNHSRLISGGGWLLRRLCTETQSPAKKENLYRMLSALDMTGGSVLETLDNYIKQGKAIRKTELERCVEQLRKYRQFQHALEIIEWMEMRKINFSWNNYAVQLDLVSKTKGVVAAEKFFSGLPPPAKNKYTYGALLNCYCKEMMKDKALSHFEKMDELGYVTSLAFNNLMSLYMRIGEPQKVPELVALMKSRSVPFSSFTYHVWMNSCAYSNDLDGVERVYEEMKTKDKDKIGWQTYSNLAAIYVKVKDFEKAERMLKMLEKQVKPRQRDAYHCLLGLYAGTGNLEEVHRVWNSLKSVSPVTNFSYLVVLSTLRRLNDIEGLTKCFKEWEASCVSYDVRLVGVCVSAYLGQNMVEEAALVFEGASRRSKEPLFRIEEMFMIYFLEKRQLDAAVRHLKSAFSEVKGDTEWHPSPRVAGAFLKYYEEETDVDAVDELCKILKANKFDDSWTKTWIDAFKSSAETDPRLKEDDPQDYHAQENYTS 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g01429 481 Gene3D Tetratricopeptide repeat domain 233 479 IPR011990 GO:0005515
Spst7g01429 481 Gene3D Tetratricopeptide repeat domain 59 232 IPR011990 GO:0005515
Spst7g01429 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
Spst7g01429 481 MobiDBLite consensus disorder prediction 461 481 - -
Spst7g01429 481 Pfam PPR repeat 129 158 IPR002885 -
Spst7g01429 481 NCBIfam pentatricopeptide repeat 129 160 IPR002885 -
Spst7g01429 481 NCBIfam pentatricopeptide repeat 198 226 IPR002885 -
Spst7g01429 481 Pfam Pentacotripeptide-repeat region of PRORP 188 296 IPR033443 -
Spst7g01429 481 SUPERFAMILY TPR-like 49 386 IPR011990 GO:0005515
Spst7g01429 481 PANTHER OS12G0527900 PROTEIN 23 457 - -
Spst7g01429 481 FunFam Pentatricopeptide repeat-containing protein mitochondrial 60 269 - -
Spst7g01429 481 SUPERFAMILY TPR-like 196 299 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g01429 Spst-Chr7 61795266 61796794 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g01429 30 439 EF-hand Containing Proteins AT1G02150 33.575 4.83e-78 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g01429 - - gmx:100781679 780.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g01429 7 61795266 61796794 Spst7g01429 7 61795266 61796794 ECH
Spst7g01429 7 61795266 61796794 Spst1g02704 1 35520241 35521254 PCT