Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g01178 ATGGCGGCTGGCCCAACCTCCCCCTCCGATCGACCCACCATGGTCCCTCCCCCAATGCTCTTCTCAGACACCATCGCAAAGGACGCCATCATAGCCTGGTTCCGAGGCGAATTCGCAGCTGCCAACGCCATCATCGACGCCCTCTGCGCTCACCTCGCCGCTTCCGCCCATGACTACGACGCTCTCTTCGCTGCTATCCACCGCCGTAGGCTCAACTGGATCCCCATCCTCCAGATGCAGAAGTACCACTCAATCGCCGATGTCACCCTTGAGCTCCGCAGAGTCTCCGAAAGAAACCACAACGGCGATACCGACGTCAACTCCGACGACAAGCGCAAATCCAACAAAAAAACGACGTCGCTGGAGAGTGTCGTCGGAAATGGTACTGCTTATGAACACGAGGAGTACGAGTCCCCCGAGAGCGAGATTACTGATTCAGGATCTCAAGAAATGCAGGCTAGTCCTATGAACGCTAGTATATGTTCCAATCATGAAGATTGTGAAGGACGTTCCTCACAATTTAAGTTGACCAAAGGTTTCACAGCAAAAGAGTCGGTGAAGGGACATATGGTGAATGTAGTAAAAGGATTGAAGTTATATGAGGACATTTTCACAGATTCAGAACTGTGCAAGCTGACAGACTTTGTGAACGAGATCCATGCTGCTGGCCAGAATGGGGAACTGTCTGGTGAAACTTTTATATTATTCAACAAGCAGATAAAGGGAAACAAGAGAGAGCTGATTCAACTGGGTGTTCCAATATTTGGACAGATAAAGGAGGATGTAAAAAGCAATATAGAGCCAATTCCAGCACTTCTCCAAGGTGTCATTGATCACCTTATTCAGTGGCAATTACTTCCCGAGTACAAAAGACCAAATGGTTGTATCATCAACTTTTTTGAAGAGGGGGAGTTTTCTCAACCATTCCTCAAACCACCGCATCTGGATCAACCTGTGTCCACTCTTCTTCTCTCTGAATCAACTATGGCTTTTGGGCGTATACTTATGAGTGAAAATGATGGAAACTACAAGGGACCTCTCATGCTCTCATTGAAGCAGGGGTCTCTTTTAGTGATGAGAGGAAACAGTGCTGATATGGCAAGGCACGTAATGTGTCCATCCCCTAACAGAAGGGTCAGCATCACCTTCTTCAGAGTTAGGCCAGACTCCAATCAAAGCCAATCACTAACTCCTGCCATGGCAAGTGCGATGACTCTGTGGCAACCTGGCATTGCCAGTCCATATGCTTTGCCAAATGTTGCTCTGAGTAGCTATGAAGGTATGGAAATTATGCCAAAATGGGGAATGCTTCGCGGCCCAATGGTGATGGTAACTCCTGTGCGTCCTGTGGCACTGAACCCCCGCAAACTTGCTGGAGGTGGAACTGGTGTGTTTTTGCCATGGAATGTGCCATCTAGAAAACCTGCCAAGCATCTTCCCCCACGTGCCCAAAAAGGGAGGCTTCTCACATTGCCTTCCCCTGTTGAACCACAAGTGGGAGAGTCCACTTCCGAACCAAGCATTTGTGTTGAAGGTTAA 1539 0.4867 MAAGPTSPSDRPTMVPPPMLFSDTIAKDAIIAWFRGEFAAANAIIDALCAHLAASAHDYDALFAAIHRRRLNWIPILQMQKYHSIADVTLELRRVSERNHNGDTDVNSDDKRKSNKKTTSLESVVGNGTAYEHEEYESPESEITDSGSQEMQASPMNASICSNHEDCEGRSSQFKLTKGFTAKESVKGHMVNVVKGLKLYEDIFTDSELCKLTDFVNEIHAAGQNGELSGETFILFNKQIKGNKRELIQLGVPIFGQIKEDVKSNIEPIPALLQGVIDHLIQWQLLPEYKRPNGCIINFFEEGEFSQPFLKPPHLDQPVSTLLLSESTMAFGRILMSENDGNYKGPLMLSLKQGSLLVMRGNSADMARHVMCPSPNRRVSITFFRVRPDSNQSQSLTPAMASAMTLWQPGIASPYALPNVALSSYEGMEIMPKWGMLRGPMVMVTPVRPVALNPRKLAGGGTGVFLPWNVPSRKPAKHLPPRAQKGRLLTLPSPVEPQVGESTSEPSICVEG 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g01178 512 SUPERFAMILY Clavaminate synthase-like 189 387 - -
Spst7g01178 512 MobiDBLite consensus disorder prediction 475 512 - -
Spst7g01178 512 MobiDBLite consensus disorder prediction 99 118 - -
Spst7g01178 512 Gene3D - 180 395 IPR037151 -
Spst7g01178 512 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 291 388 IPR005123 -
Spst7g01178 512 MobiDBLite consensus disorder prediction 99 138 - -
Spst7g01178 512 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 26 489 IPR044842 GO:0003729|GO:0006402|GO:0032451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g01178 Spst-Chr7 36280917 36285646 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g01178 K10767 - gmx:100791586 885.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g01178 7 36280917 36285646 Spst7g01178 7 36280917 36285646 ECH
Spst1g03242 1 40922921 40929107 Spst7g01178 7 36280917 36285646 PCT