Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03242 ATGGCGGCTGTCCCAGCATCGCGGACCGATCCTCCGGCAATGATGCCGACGCAGCTCCTCATCTCCGACTACTTCGCCAAGGACGCCGTACTCGCCTGGTTCCGCGGCGAGTTTGCCGCTGCCAACGCTATCATCGACGCGCTCTGCAGCCACCTCGCGCAACTTGCCGATGTCTCCCCCGATAATTATGACGCCACCTTCGCGGCCATCCACCACCGCCGCGTCAACTGGATCCCTCTCATTCAGATGCAGAAGTACCACTCCATCGCTGACGTCACTCACGAGCTCCGACGAGTCGCGGACAGGAAAAGGGAGACCCAAGGCACCAGGAAGAATGAGACTAGCTTCCACGAGGAACAGAAATTGGAGAAGGAAACCGTGGAAACTGATAGAAATGAAGGTGGAGAAGCTGGACCGGAGTATGATTCGCCGGACAGTGAAATTACTGACTCAGCCGGTTGCATTATTATGGCTGTTGTTGTTGACGTCACATTTTTTGTGGTCTGGCGTGCAGGATCTCAGGAAATGCAACCCAGTGTCCTGAACAATAATATATGTTCCAATCATGAAGAATGTGAAGGACGTACATCGCAGATAAAGCTGACAAAGGGTTTCACAGCAAAGGAGCCCGTAAAGGGACATATGGTGAATGTTGTGAAAGGATTGAAGTTGTACGAGGACGTTTTTTCTGAATCAGAAATCTGCAAGCTGACTGATTTTGTGAATGATATTCATGCTGCTGGCCAGAACGGGGAACTCTCAGGCGAAACCTTTATACTATTCAACAAACAGATGAAGGGAAACAAGAGAGAGCTGATTCAGTTGGGAGTTCCGATATTTGGACAGATAAAGGACGATACCAAAAGCAATATAGAGCCGATTCCTGCACTTCTCCATGATGTCATTGATCACCTTATTCAATGGAAATTAATTCCAGAGTACAAAAGGCCAAATGGTTGTATCATCAACTTTTTTGAAGAGGAGGAATTTTCTCAACCATTCCTGAAACCACCGCATTTGGACCAACCTCTATCCACACTTCTTCTCTCTGAGTCAACAATGGCTTTTGGGCGTATCCTTGTCAGTGAAAATGACGGGAACTACAAGGGGCCACTAATGCTCTCATTGAAGGAGGGGTCTCTTATAGTGATGAGGGGAAACAGTGCTGACATGGCAAGGCACGTAATGTGTCCATCCCCTAACAGAAGGGTGAGCATCAGCTTCTTTAGAGTGAGGCCAGACTCCAATCAATGTCAATCACAGACTCCTACCATGACAACTGCGATGGCTCTCTGGCAACCTGGCATTACTAGCCCATATACTATGCCAAATGGAGCACTAAGTGGCTATGAGGTAATGGATATGATGCCTAACTGGGGAGTATTTGGTGCTCCAATGGTTATGCTACCCCCTATGCGCCCTATGGCAGTGAACTCTCGCAAACTTCCCCGAGGTGGAACTGGGGTTTTCTTGCCTTGGAAGGGAGCACCGAGAAAACACGCAAGGCATCTACCACCGCGTGCCCAAAAAGGACGACTAATGGAATTACCTTCCCCAGTTGAATCACACTTGGGAGAGGCTACTTCTGAACCCAGTATTGCTGTTGAAGGGTAA 1614 0.4888 MAAVPASRTDPPAMMPTQLLISDYFAKDAVLAWFRGEFAAANAIIDALCSHLAQLADVSPDNYDATFAAIHHRRVNWIPLIQMQKYHSIADVTHELRRVADRKRETQGTRKNETSFHEEQKLEKETVETDRNEGGEAGPEYDSPDSEITDSAGCIIMAVVVDVTFFVVWRAGSQEMQPSVLNNNICSNHEECEGRTSQIKLTKGFTAKEPVKGHMVNVVKGLKLYEDVFSESEICKLTDFVNDIHAAGQNGELSGETFILFNKQMKGNKRELIQLGVPIFGQIKDDTKSNIEPIPALLHDVIDHLIQWKLIPEYKRPNGCIINFFEEEEFSQPFLKPPHLDQPLSTLLLSESTMAFGRILVSENDGNYKGPLMLSLKEGSLIVMRGNSADMARHVMCPSPNRRVSISFFRVRPDSNQCQSQTPTMTTAMALWQPGITSPYTMPNGALSGYEVMDMMPNWGVFGAPMVMLPPMRPMAVNSRKLPRGGTGVFLPWKGAPRKHARHLPPRAQKGRLMELPSPVESHLGEATSEPSIAVEG 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03242 537 Gene3D - 205 420 IPR037151 -
Spst1g03242 537 MobiDBLite consensus disorder prediction 491 514 - -
Spst1g03242 537 SUPERFAMILY Clavaminate synthase-like 214 411 - -
Spst1g03242 537 MobiDBLite consensus disorder prediction 100 138 - -
Spst1g03242 537 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 316 413 IPR005123 -
Spst1g03242 537 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 26 134 IPR044842 GO:0003729|GO:0006402|GO:0032451
Spst1g03242 537 MobiDBLite consensus disorder prediction 100 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03242 Spst-Chr1 40922921 40929107 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03242 K10767 - gmx:100796344 893.264
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03242 1 40922921 40929107 Spst1g03242 1 40922921 40929107 ECH
Spst1g03242 1 40922921 40929107 Spst7g01178 7 36280917 36285646 PCT