Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g01143 ATGCGGCCGAGAGTAGCGTACTCATTCCCTGAGGAGGTGCTGGAGCACGTGTTCTCCTTCATCGAGTGCGATAAGGACCGTGGCTCGATCTCCCTTGTCTGTAAGTCCTGGTACGAGATCGAGCGCTGGTGCCGCCGGAGAGTCTTCGTCGGAAACTGCTATGCCGTCTCTCCGGATACCGTCGTCAACCGCTTCCCCAAAGTTAGATCCATCACCATCAAGGGCAAGCCGCACTTCGCGGACTTCAATTTGGTCCCCGAGGGTTGGGGCGCTTACGTCGGCCCTTGGATCAAGGCCATGGCCGCTGCCTACCCCTGGCTCCAGGAGATCAGGCTCAAGAGGATGGTTGTCACCGACGAATGCTTCGAACTTATCGCCAAATCGTTCAAGAACTTCGGAGTGCTGGTGCTCACCTCTTGCGAGGGTTTCACCACGGATGGACTTGCTGCCATTGCCGCCCATTGCAGGAATTTGAGGGAGTTGGAGTTGCGGGAGAGTGAAGTGGATGACATTTCTGGGCACTGGCTTAGCCATTTCCCCGATTCATACACATCATTGGTTTCCCTTAACATTTCTTGCTTAGGCAATGAGGTGAATTTGTCCGCCCTAGAGCGTCTGGTTAGTAGGTGTCCCAACCTGCAGACTCTCCGCCTGAACCGTGCTGTGCCCCTAGACAGGCTGGCCAACCTTCTTCGTGGAGCTCCTCAGTTGGTTGAGTTAGGCACTGGGGCCTACACGACTGACATGCGGCCGGAGGTCTTCTCGAATCTGACCGAAGCATTTTCTGGGTGCAGGCAGTTGAGAAGCTTGTCTGGATTTTGGGACGTGCTCCCCTCCTACCTTCCAGCTGTTTATCCTATCTGCTCCAACCTTACAACACTGAACATGAGTTATGCAACTATTCAAAGCCCTGATCTTATCAAGCTTGTCAGTCAGTGTGAGAATTTACAACGGTTATGGGTGCTGGATTACATAGAAGATGCTGGCCTTGAAGTGATTGCTGCATCGTGTAAGGATCTTAGGGAGTTGAGGGTGTTTCCGTCTGACCCGTTTGGGTTGGTGGAACCAAATGTAGCGTTGACAGAGCAGGGCCTTGTTTCTGTGTCTGAAGGCTGTCCCAAGCTCCAGTCAGTTCTATATTTTTGTCGTCAAATGTCTAACGCTGCCTTGCATACAATTGCCAGGAACAGGCCTAATATGACTCGTTTTAGACTGTGTATTATTGAGCCTCAAGTTCCAGACTATATTACCCATGAATCTCTGGATTCTGGTTTTGGAGCAATTGTAAAGAATTGCAAGGATCTGCGGCGCCTTTCCCTTTCTGGGCTTCTTACTGACCGTGTTTTTGAGTATATTGGGACTTATGGTAAGAAGCTTGAGATGCTTTCTGTGGCTTTTGCTGGAGATAGCGATTTGGGACTCCATCATGTGCTGTCTGGGTGTGACAACCTTAGGAAGCTGGAGATCAGGGACTGCCCCTTTGGTGACAAAGCCCTTTTAGCCAATGCTGCAAAGCTGGAGACAATGCGATCCCTTTGGATGTCCTCTTGCCTCGTAAGTTATGAAGCATGTAAACTGCTGGGTCAGAAAATGCCGATGCTTAATGTTGAAGTCATTGATGAAAGAGGACCTCCAGATTCAAGGCCGGCTAGTAGTCCTGTCGAGAAGTTATACATATACAGGACTGTTTCAGGGCCAAGATTGGACATGCCAGGCTATGTATGGCGAATGGAAGATGATTCTGCATTAAGAATTTCTTGA 1761 0.5026 MRPRVAYSFPEEVLEHVFSFIECDKDRGSISLVCKSWYEIERWCRRRVFVGNCYAVSPDTVVNRFPKVRSITIKGKPHFADFNLVPEGWGAYVGPWIKAMAAAYPWLQEIRLKRMVVTDECFELIAKSFKNFGVLVLTSCEGFTTDGLAAIAAHCRNLRELELRESEVDDISGHWLSHFPDSYTSLVSLNISCLGNEVNLSALERLVSRCPNLQTLRLNRAVPLDRLANLLRGAPQLVELGTGAYTTDMRPEVFSNLTEAFSGCRQLRSLSGFWDVLPSYLPAVYPICSNLTTLNMSYATIQSPDLIKLVSQCENLQRLWVLDYIEDAGLEVIAASCKDLRELRVFPSDPFGLVEPNVALTEQGLVSVSEGCPKLQSVLYFCRQMSNAALHTIARNRPNMTRFRLCIIEPQVPDYITHESLDSGFGAIVKNCKDLRRLSLSGLLTDRVFEYIGTYGKKLEMLSVAFAGDSDLGLHHVLSGCDNLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCLVSYEACKLLGQKMPMLNVEVIDERGPPDSRPASSPVEKLYIYRTVSGPRLDMPGYVWRMEDDSALRIS 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g01143 586 Gene3D - 1 45 - -
Spst7g01143 586 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 87 537 - -
Spst7g01143 586 SUPERFAMILY F-box domain 7 43 IPR036047 GO:0005515
Spst7g01143 586 FunFam Transport inhibitor response 1 46 577 - -
Spst7g01143 586 SMART LRR_CC_2 372 396 IPR006553 -
Spst7g01143 586 SMART LRR_CC_2 432 455 IPR006553 -
Spst7g01143 586 SMART LRR_CC_2 481 505 IPR006553 -
Spst7g01143 586 Pfam F-box 7 47 IPR041567 -
Spst7g01143 586 FunFam Transport inhibitor response 1 5 45 - -
Spst7g01143 586 CDD F-box_AtTIR1-like 8 45 - -
Spst7g01143 586 SUPERFAMILY RNI-like 38 534 - -
Spst7g01143 586 Gene3D Ribonuclease Inhibitor 46 577 IPR032675 -
Spst7g01143 586 Pfam Transport inhibitor response 1 protein domain 66 112 IPR041101 -
Spst7g01143 586 SMART fbox_2 9 50 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g01143 Spst-Chr7 35418806 35421122 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g01143 K14485 - gmx:100809794 1111.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g01143 7 35418806 35421122 Spst7g01143 7 35418806 35421122 ECH
Spst1g02585 1 34354933 34358042 Spst7g01143 7 35418806 35421122 PCT