Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02585 ATGCAGAAAATGTCGTACACGTTCTCCTTTCCGGAGGAGGTGCTGGAGCACGTGTTCTCGTTCATTGAGGGCGAGAGGGACCGGAACGCGATCTCGCTCGTGTGCAAGTCGTGGTACGAGATCGAGCGGTGGTGCAGGAGGAAGGTTTTCGTGGGAAACTGCTACGCGGTGAGCCCTGTCATGGTGATCAAGCGGTTTCCGGAGGTAAGATCCATTGCGCTCAAGGGGAAGCCGCACTTCGCGGACTTCAATTTGGTCCCCGAGGGTTGGGGCGGTTACGTCTGTCCCTGGATCGCTGCCATGGCCTGCGCCTTCCCCTGGCTCGAAGAGATCAGACTCAAGAGGATGGTCATCACCGACGACAGCTTAGAACTCATCGCCAAGTCCTTCAAAAACTTCAAGGTGCTGGTTCTCACTTCCTGCGAGGGTTTCACCACCGACGGACTTGCCGCCATTGCTGCCAACTGCAGGAATTTGAAGGAGTTGGACTTGCAAGAGAGTGAAGTGGATGACCTTAGTAGTGGGCACTGGTTAAGCCATTTTCCTGATTCCTACACGTCACTAGTTTCACTTAACATCTCTTGCTTAGGCAATGAGGTGAGTTTATCTGCACTAGAGCGTTTGCTTGGGAGGTGTCCCAACCTTCAGACCTTGCGCCTCAACCGGGCTGTGCCCCTTGATAGACTACCCAATCTACTTTCCCGTTGTCCTCAGCTGGTTGAGTTAGGCACAGGAGTCTACTCAACCGAGATGCGACCAGAGGTCTTCTCAAACCTGGAAGCAGCATTTTCGGGGTGCAAGCAGTTGAAGAGCTTGTCTGGCTTTTGGGACGTACTTCCGTCCTACCTTCCAGCTGTCTACCCCATCTGCTCCAGGCTAACATCGTTAAATTTGAGTTATGCTATTATTCAAAGCTCTGATCTTATTAAGCTCATCAGTCAATGCCCAAATTTGTTGCGGTTATGGGTTCTGGATTACATAGAAGATGCTGGTCTTTATACCCTTGCTGCATCTTGTAAGGATCTAAGGGAGTTAAGGGTGTTTCCGTCTGACCCATTTGGTTTAGAACCAAATGTTGCATTGACAGAGAAAGGGCTTGTCTCCGTGTCTGAAGGTTGTCCCAAGCTCCAATCAGTTCTATACTTCTGTCGTCAAATGTCTAATGCAGCCCTGCATACAATTGCGCGGAACAGGCCTAATTTGACTCGTTTTCGGCTTTGTATTATTGAGCCTCGAACGCCTGACTATCTTACGCTTGACCCACTGGATTCTGGTTTTGGAGCTATCGTGGAGCATTGCAAGGATCTGCAACGCCTATCCCTATCGGGTCTTCTTACTGATCGAGTTTTCGAGTATATTGGTACTTACGGGAAGAAGCTGGAGATGCTATCTGTGGCTTTTGCTGGAGATAGTGATTTGGGACTCCATCATGTGCTATCTGGTTGTGATAACCTTAGGAAGCTGGAGATCAGGGACTGCCCCTTTGGTGACAAGCCCCTTTTGGCCAATGCTGCAAAGCTGGAGACAATGCGATCCCTTTGGATGTCCACCTGCTCAGTGAGTTATGGAGCATGTAAACGACTGGGTCAAAAAATGCCCAGACTCAACGTTGAAGTCATTGATGAAAGAGGGCCTCCAGATTCAAGGCCAGATAATTGTCCTGTTGAGAAGCTATATATTTACAGGACTATTGCCGGGCCAAGGTTGGACATGCCTGGTTTTGTGTGGACAATGGAAGATGATTCTTCGTTAAGGATCGAGTGA 1764 0.496 MQKMSYTFSFPEEVLEHVFSFIEGERDRNAISLVCKSWYEIERWCRRKVFVGNCYAVSPVMVIKRFPEVRSIALKGKPHFADFNLVPEGWGGYVCPWIAAMACAFPWLEEIRLKRMVITDDSLELIAKSFKNFKVLVLTSCEGFTTDGLAAIAANCRNLKELDLQESEVDDLSSGHWLSHFPDSYTSLVSLNISCLGNEVSLSALERLLGRCPNLQTLRLNRAVPLDRLPNLLSRCPQLVELGTGVYSTEMRPEVFSNLEAAFSGCKQLKSLSGFWDVLPSYLPAVYPICSRLTSLNLSYAIIQSSDLIKLISQCPNLLRLWVLDYIEDAGLYTLAASCKDLRELRVFPSDPFGLEPNVALTEKGLVSVSEGCPKLQSVLYFCRQMSNAALHTIARNRPNLTRFRLCIIEPRTPDYLTLDPLDSGFGAIVEHCKDLQRLSLSGLLTDRVFEYIGTYGKKLEMLSVAFAGDSDLGLHHVLSGCDNLRKLEIRDCPFGDKPLLANAAKLETMRSLWMSTCSVSYGACKRLGQKMPRLNVEVIDERGPPDSRPDNCPVEKLYIYRTIAGPRLDMPGFVWTMEDDSSLRIE 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02585 587 Gene3D - 2 46 - -
Spst1g02585 587 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 89 539 - -
Spst1g02585 587 CDD F-box_AtTIR1-like 9 46 - -
Spst1g02585 587 Gene3D Ribonuclease Inhibitor 47 578 IPR032675 -
Spst1g02585 587 FunFam Transport inhibitor response 1 47 578 - -
Spst1g02585 587 Pfam Transport inhibitor response 1 protein domain 67 113 IPR041101 -
Spst1g02585 587 SMART LRR_CC_2 105 129 IPR006553 -
Spst1g02585 587 SMART LRR_CC_2 373 397 IPR006553 -
Spst1g02585 587 SMART LRR_CC_2 482 506 IPR006553 -
Spst1g02585 587 SMART LRR_CC_2 315 338 IPR006553 -
Spst1g02585 587 SMART LRR_CC_2 290 314 IPR006553 -
Spst1g02585 587 SMART LRR_CC_2 433 456 IPR006553 -
Spst1g02585 587 SMART LRR_CC_2 130 155 IPR006553 -
Spst1g02585 587 SUPERFAMILY F-box domain 1 41 IPR036047 GO:0005515
Spst1g02585 587 Pfam F-box 8 48 IPR041567 -
Spst1g02585 587 FunFam Transport inhibitor response 1 6 46 - -
Spst1g02585 587 SMART fbox_2 10 51 IPR001810 GO:0005515
Spst1g02585 587 SUPERFAMILY RNI-like 85 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02585 Spst-Chr1 34354933 34358042 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02585 K14485 - gmx:100779021 1128.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02585 1 34354933 34358042 Spst1g02585 1 34354933 34358042 ECH
Spst1g02585 1 34354933 34358042 Spst7g01143 7 35418806 35421122 PCT