Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00962 TATATAGTGTGCAAAGGGGCATTTTGTGTTGTGCCATTGTCCTCTGCAAAATCATACACAAATACGTTGCCTGGGTTATCAAAAATGAGTTGCAGAAAATGGGATATGTTTACCTTACTGTTATCAGAAGATGAGGATTCAACAATCAGGATGCTGGTGGTGGCTGTGCCTATCTTTGTGTTTACAATGTATGCTACTATGAGCAGCCCTCACGTTTGTGAATACGGTTTTATTACAGACTGCATTGACTCACTGAGACCACCACCTCCTCCTCCTCCATCTAATTCCTCTTCAGATACTGCACTTCATCTTTATAATCAAACTGAAGTTTCCAATGGCTCCAAACCTTTGTTCATTTTGGCTAATTATCTGAATGAATCTGGTGAACCTCACCCACAAGAGGAGCAAAAAATAATGGTAAGCAACTTGGATGAAACTGAGAATGTTTTAGCACAAGCTCGAGCTGCAATCACTGAAGCCAGAAATGGGAATCGAACAAAAGATTCAGATTATGTTCCCACAGGTCCAATGTATTGGAATGCTAAGGCATTTCACAGGAGCTACCTAGAAATGGAGAAACACTTCAAAGTATTTGTGTATGAAGAAGGGGACCCTCCAGTTTTGGACAGTGGACCATCCAAAAGCATATACTCCATGGGTAACTTCATGCATGCTATTGAAGACAATGACCATTTTCGAACTAAAGATCCAGAGAAAGCACATGTGTTTTTTCTCCCTTTTACTGTAGAAATGATGGTTCCATATGAAAGAGTCTCAGGAGACTTCAGTCCCATGAGAAAAAATGTCCAAGATTATCTCAATGGCATTGCTGCAAGATACCCTTATTGGAATCGAAGCCGTGGAGCTGATCACTTCACGCTTACTTGCCATGACTGGGGCTCATCATTATCCTTACCTTATCCGCACAACAACTCTATTCGTGTACTTTGCAATGCCAACACATCTAAAGGATTTAAGCCTGCAAAGGATGTCTCATTTCCCGAAATTAGTCTCAAAAATGGTTTCATTGGTGGGCTATCGGCATCTAAACGTTCAATTTTGGCTTTCTTTGCTGGGGGAGCTCATGGACCCATTAGAACAGATCTTCTTGAGCATTGGGAGAATAAGGATGAAGATATTCAGGTTCACAAGTATCTCCAAAAGGGCATCTCTTACTATGAGATGATGAGAAAGAGCAAGTTTTGCCTTTGCCCTAATGGGAATGAGGTGGCTAGCCCTAGAGTGGTGGAGGCAATTTACACAGGGTGTGTTCCTGTGCTCATTTCGGAGAACTATGTCCCTCCTTTCAGTGACGTTTTGAACTGGAAGTCATTCTCAGTTGAGCTGTCAGTGAAGGACATTCCTAACCTGAAGGACATCTTGATGAGTGTTACTCCAAAAGAATATATAAGAATGCATAGAAGATTAAAACAAATGACAAGACACTTTCAAGTGCATTCTCCACCCAAACGATTCGATGTGTTTCACATGATCCTTCATTCTGTGTGGCTTAGGAGGCTCAACATCAAAGTTCATGATGATCTAATCACGAGTCATCGCAACTTGGCTATTATGTCCGATGAATTTAGTCGCTTGGCTATTATGTCGGATGGACCTAGTATATGTCCGATGAATCTAGGTTATGAGGCTTTCAAGCCAGATTACACTGTCCTTGCTGCCATTCTCAAGTCTTGTTGTGCCCTTTTGGCTCCCAAATTGGGGACATCTCTGCATAGTTATGTTGTTAAACAAGGTCATGTTTTTTGCCAGGTTACCAATCAAGGGTTGCTCAACATGTATATCAAGTGTGGCATGCTTGATGACTGCCTCAGGCTGTTTGATGAACTCAATCACTGTGATCCTGTTACTTGGAATATTGTTTTGTCTGGGTTTTCAGGGTCAAACAAATGTGATTCTGATGTGATGAGAGTGTTTAAGATGATGCATTCCAGTGGAGAGGCTATGCCGAATTCAATTTCCGTTGCTACTGTGCTTCCTGTTCGTGCTCGTTTAGGGGACCTGGATGCTGGACTGTGTGTGCATGGTTATGTTTTCAAGTCTGGTTTTCAACAAGACACCCTTGGTGGAAATGCTCTCGTGTCAATGTATGCAAAGTGTGGGGTGGTGTCTCGTGATGCATATGCTGTCTTTGAAGATATTGTTCACAAAGATGTTGTTTCGTGGAGTGCAATGATTGCGGGCTTATTTGAGAATGGATTAGTGGAGGATGCATTCTTGTTGTTCAGTTCATTGGTGAAAGGGCCTACAAAGTCAAATTATGCGACTGTTGCAAATATTCTGCCTGTTTGTGCTTCCTATGATAAGAGTGTTGCATACCGGTGTGGCAGGCAGATCCACTCTTAA 2364 0.4205 YIVCKGAFCVVPLSSAKSYTNTLPGLSKMSCRKWDMFTLLLSEDEDSTIRMLVVAVPIFVFTMYATMSSPHVCEYGFITDCIDSLRPPPPPPPSNSSSDTALHLYNQTEVSNGSKPLFILANYLNESGEPHPQEEQKIMVSNLDETENVLAQARAAITEARNGNRTKDSDYVPTGPMYWNAKAFHRSYLEMEKHFKVFVYEEGDPPVLDSGPSKSIYSMGNFMHAIEDNDHFRTKDPEKAHVFFLPFTVEMMVPYERVSGDFSPMRKNVQDYLNGIAARYPYWNRSRGADHFTLTCHDWGSSLSLPYPHNNSIRVLCNANTSKGFKPAKDVSFPEISLKNGFIGGLSASKRSILAFFAGGAHGPIRTDLLEHWENKDEDIQVHKYLQKGISYYEMMRKSKFCLCPNGNEVASPRVVEAIYTGCVPVLISENYVPPFSDVLNWKSFSVELSVKDIPNLKDILMSVTPKEYIRMHRRLKQMTRHFQVHSPPKRFDVFHMILHSVWLRRLNIKVHDDLITSHRNLAIMSDEFSRLAIMSDGPSICPMNLGYEAFKPDYTVLAAILKSCCALLAPKLGTSLHSYVVKQGHVFCQVTNQGLLNMYIKCGMLDDCLRLFDELNHCDPVTWNIVLSGFSGSNKCDSDVMRVFKMMHSSGEAMPNSISVATVLPVRARLGDLDAGLCVHGYVFKSGFQQDTLGGNALVSMYAKCGVVSRDAYAVFEDIVHKDVVSWSAMIAGLFENGLVEDAFLLFSSLVKGPTKSNYATVANILPVCASYDKSVAYRCGRQIHS 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00962 787 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 109 502 IPR004263 GO:0006486|GO:0016757
Spst7g00962 787 Coils Coil 143 163 - -
Spst7g00962 787 Gene3D Tetratricopeptide repeat domain 545 673 IPR011990 GO:0005515
Spst7g00962 787 Gene3D Tetratricopeptide repeat domain 674 785 IPR011990 GO:0005515
Spst7g00962 787 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 724 758 IPR002885 -
Spst7g00962 787 Pfam Exostosin family 192 463 IPR040911 -
Spst7g00962 787 Pfam PPR repeat 726 752 IPR002885 -
Spst7g00962 787 Pfam PPR repeat 596 616 IPR002885 -
Spst7g00962 787 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 620 655 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00962 Spst-Chr7 16276858 16287664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00962 544 787 Glycoside Hydrolase AT3G49170 26.721 8.38e-23 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00962 - - gmx:100777099 677.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00962 7 16276858 16287664 Spst7g00962 7 16276858 16287664 ECH
Spst1g02809 1 36644112 36647194 Spst7g00962 7 16276858 16287664 PCT