Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00324 ATGCTAGAGGACCCACTTAGGCTATTTGATGAGGGTTCTTCTAAAGTCGATGATGGTGGTACGTTAAAGGATTTCATCATGCAAAGTACACATGTTTTGAGTTTCAAGAGTTTTGACAAATTGGGTGAGATTTCTTCTTCGCTTCAACTGGTTAACGTCAACGATTATGGGGCTCAAGGAGATGGTAAAAGTGATGACACCCAGGCATTCAAGAAGGCTTGGGAAGTAGCGTGTTCATCTGAGGGAGCAGTTTTTGTTGTGGCACAGAAGAATTATCTACTCAAGCCAATCACATTTTCTGGCCCTTGCAAATCCAACATCCAAGTCCGGATCTATGGAAGCCTTGAAGCATCAGATAAGGCATCAGATTACAGCGAAGACCGCGCACACTGGCTTATGTTCGACAGTGTTCAGAAACTATCAGTCAAAGGTGGTGGAAGCATCGATGGAAACGGAAACATATGGTGGCAAAACTCATGCAAAAGGAACCAAAATCTTCCTTGCAAGAAGGCCCCTACGGCGTTGACTTTTTACAAGTGCAAGGACTTGACAGTTGAGGATTTGACGATAAAAAATGGGCAACAGATGCATGTTTCATTCCAAAACTCAGAGAATGTTTTAGTTTCTGGTCTCACTGTGACAGCACCTGAGGATAGCCCAAACACTGATGGAATTCACATCACAAACACTCAGAACATCCAAATCCAGAACACAGTTACAGGAACTGGTGATGATTGTATATCAATTGAAAGTGGTTCCATGAATGTTCAAGTCACAAACATTACATGCGGACCAGGCCATGGTATCAGCATCGGAAGCTTAGGGTCCCAGGAATCCAAGGATTTTGTTTCAGGAGTAATGGTGAACGGAGCTAAATTTTCTGGAACTACAAATGGAGTAAGAATCAAGACATGGCAGGGAGGTTCAGGAAGTGCAAACAACATCAAGTTTCAGAACATTGAAATGGAGAAAGTGACCAACCCCATAATAATAGATCAAAATTACTGTGATCAAGCGACACCATGCAAACAACAACAATCTGCAGTTCAGATCAGGAATGTGTTGTACGAAAACATAAGGGGCACAAGTGCTTCAGAAGTGGGTGTGCAGTTTGATTGCAGCGAGAAGTTTCCATGCGAGGGGATAGTGTTGCAGAACATAGAGCTGCAACATGAAAGTGGAGGAGGGGCCATGGCTTCATGCAACAATGTTCAGTTGTCCTACACAGGAGATGTCAACCCTCAATGCCCATAG 1254 0.4346 MLEDPLRLFDEGSSKVDDGGTLKDFIMQSTHVLSFKSFDKLGEISSSLQLVNVNDYGAQGDGKSDDTQAFKKAWEVACSSEGAVFVVAQKNYLLKPITFSGPCKSNIQVRIYGSLEASDKASDYSEDRAHWLMFDSVQKLSVKGGGSIDGNGNIWWQNSCKRNQNLPCKKAPTALTFYKCKDLTVEDLTIKNGQQMHVSFQNSENVLVSGLTVTAPEDSPNTDGIHITNTQNIQIQNTVTGTGDDCISIESGSMNVQVTNITCGPGHGISIGSLGSQESKDFVSGVMVNGAKFSGTTNGVRIKTWQGGSGSANNIKFQNIEMEKVTNPIIIDQNYCDQATPCKQQQSAVQIRNVLYENIRGTSASEVGVQFDCSEKFPCEGIVLQNIELQHESGGGAMASCNNVQLSYTGDVNPQCP 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00324 417 ProSitePatterns Polygalacturonase active site. 260 273 IPR000743 GO:0004650|GO:0005975
Spst7g00324 417 SMART pbh1 312 333 IPR006626 -
Spst7g00324 417 SMART pbh1 253 273 IPR006626 -
Spst7g00324 417 SMART pbh1 283 304 IPR006626 -
Spst7g00324 417 SMART pbh1 203 229 IPR006626 -
Spst7g00324 417 SMART pbh1 180 200 IPR006626 -
Spst7g00324 417 SMART pbh1 230 251 IPR006626 -
Spst7g00324 417 Gene3D - 43 414 IPR012334 -
Spst7g00324 417 FunFam Polygalacturonase QRT2 37 417 - -
Spst7g00324 417 SUPERFAMILY Pectin lyase-like 49 416 IPR011050 -
Spst7g00324 417 PANTHER - 49 404 - -
Spst7g00324 417 Pfam Glycosyl hydrolases family 28 78 405 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00324 Spst-Chr7 2546596 2549066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00324 6 416 Glycoside Hydrolase AT3G57510 54.762 5.96e-157 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00324 K01184 - gmx:100777940 638.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00324 7 2546596 2549066 Spst7g00324 7 2546596 2549066 ECH
Spst7g00324 7 2546596 2549066 Spst1g03378 1 42383417 42385957 PCT