Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03378 ATGGCCCTCCTCGAACAACTCTTCTTCTCATTCACCATTATCATCATTTCTTTTGTTGCTTGTTATGAAACCTTGCAAGAGGACCCACTTAATATAAATGTTCATGATTCACCTTTTATTGATGATGGTGGGACATTATTTAAGAACTTGATCAAGCAAAGCACAAACGTTTTGAGCTCAAACAGTTTTGAGAAGCGTGAATCCATCAAAAAGGTTAATGTCAATGATTATGGAGCTAAGGGGAATGGTGATACTGATGATTCAGAGGCTTTCAAGAAGGCTTGGGATGTGGTATGTTCTTCTGGGGAAGCAATTCTGTGGGTGCCTGAGGAGAATTATCTGCTCAAACCAATCAGATTCTCTGGCCCTTGCAAACCAAACATTGAAGTGCAGATTCTTGGAACCATAGAGGCATCGGATGATCCATCAGATTACGAGGAAGACAGCAGACACTGGCTTGTATTTGACCATATTAAGAAACTGTTTGTTTATGGTGGTGGAACCATCGATGGAAACGGCAAAATATGGTGGAAAAACTCATGCAAAAGGAACAAAAAGAAACCTTGCAAGGATGCTCCAACGGCTCTGACTTTCGATAATTGTGAGGACTTGATAGTTGAGAACTTGAGCATAGAAAATGCTCAACAAATCCATGTTTCATTCCAAGACTCCGAGAATGTTAAGGTTTCTGGCCTTAACGTGACTGCACCAGAGGATAGCCCCAACACCGATGGGATTCATGTCACCAATACGCAAAACATCCAAATCTCAGACTCTGTTATAGGAACTGGTGATGATTGTATATCTATCGTACATGGATCTAAAAATGTAGAAGCAACAAACATCACCTGTGGACCTGGCCATGGTATCAGTATTGGAAGCTTAGGGGCTGGAGAATCCAAGGAAATTGTTTCAGGAATACTAGTGAATGGAGCCAAGATATTTGGAACTAAAAATGGAGTTAGAATCAAGACATGGCAGGGAGGGTCAGGTAGTGCTAGTGACATCCAATTTCAGAACATTGAGATGGAGAATGTGACCAACCCGATAATAATAAACCAGAATTACTGTGACAAGAAAAAAAAGCCATGCAAAAAAGGGAAATCTGCTATACAGATCAAGAATGTGTGGTACCAGAACATAACTGGCACAAGTGCTTCTGATATAGCTGTGAAGTTTGATTGCAGTGAGAAATTTCCATGCCAGGAGATAACATTGCAGAACATAGACCTTGAATGTGAAGGAGGAGATGATGCTGAGGCTTGGTGTAAAAATGTTGAATTGTCTTACTTTGGATACGTTAAGCCTCGTTGCAATTCAGAAAAGAGAAATGCATCTACTAATATTATTACCTCCATATGGAAATACTTCTCATGGTTAACATGA 1386 0.4019 MALLEQLFFSFTIIIISFVACYETLQEDPLNINVHDSPFIDDGGTLFKNLIKQSTNVLSSNSFEKRESIKKVNVNDYGAKGNGDTDDSEAFKKAWDVVCSSGEAILWVPEENYLLKPIRFSGPCKPNIEVQILGTIEASDDPSDYEEDSRHWLVFDHIKKLFVYGGGTIDGNGKIWWKNSCKRNKKKPCKDAPTALTFDNCEDLIVENLSIENAQQIHVSFQDSENVKVSGLNVTAPEDSPNTDGIHVTNTQNIQISDSVIGTGDDCISIVHGSKNVEATNITCGPGHGISIGSLGAGESKEIVSGILVNGAKIFGTKNGVRIKTWQGGSGSASDIQFQNIEMENVTNPIIINQNYCDKKKKPCKKGKSAIQIKNVWYQNITGTSASDIAVKFDCSEKFPCQEITLQNIDLECEGGDDAEAWCKNVELSYFGYVKPRCNSEKRNASTNIITSIWKYFSWLT 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03378 461 ProSitePatterns Polygalacturonase active site. 281 294 IPR000743 GO:0004650|GO:0005975
Spst1g03378 461 Pfam Glycosyl hydrolases family 28 105 427 IPR000743 GO:0004650|GO:0005975
Spst1g03378 461 PANTHER - 72 426 - -
Spst1g03378 461 SUPERFAMILY Pectin lyase-like 69 442 IPR011050 -
Spst1g03378 461 Gene3D - 53 457 IPR012334 -
Spst1g03378 461 SMART pbh1 333 354 IPR006626 -
Spst1g03378 461 SMART pbh1 251 272 IPR006626 -
Spst1g03378 461 SMART pbh1 224 250 IPR006626 -
Spst1g03378 461 SMART pbh1 201 221 IPR006626 -
Spst1g03378 461 SMART pbh1 304 325 IPR006626 -
Spst1g03378 461 FunFam Polygalacturonase QRT2 57 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03378 Spst-Chr1 42383417 42385957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03378 53 438 Glycoside Hydrolase AT3G07970 54.872 4.92e-145 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03378 K01184 - gmx:100797601 788.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03378 1 42383417 42385957 Spst1g03378 1 42383417 42385957 ECH
Spst7g00324 7 2546596 2549066 Spst1g03378 1 42383417 42385957 PCT