Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00225 ATGCTGAGCGTGGTGCGCGTGCACCTGCCCTCGGAAATTCCCATTGTAGGCTGCGAACTCACGCCGTATGTCCTCCTTCGCCGCCCCGACAAGACCATCTCCACCGATGATGTTCCCGAAATTGCCCCCTTAGATGGTCATTTCCTTCGCTATAAATGGTATCGAGTACAGAGTGATAAAAAAGTTGCTGTCTGTAGCATACATCCATCAGAACAAGCCACACTGCAATGCCTAGGTTGTGTTAAGGCCAAAATTTCTCTTTCCAAGAGTTACCATTGCAGCACAAAGTGTTTTTCAGACGCATGGCAGCATCATCGGGTCTTACATGATCGTGCTGCTAGTGCTCTTAATGAAAATGGAAATGAGGAGGAAGAGGTATTTGGGCGCTTTAATAGTACTGGATCTGGGGCAATCAATTCCAGCTTATCTGCTTCTGCATCAAGTGCTAGCTTGACAAATGGGTCTGGAACACCTTTGTATCCCGCTGCTGTCACACAAAGAAGTGGTGAAACTTGGTTTGAAGTTGGTAGAGCTAAGACTTACACCCCTACTGCTGATGACATTGGTCATGTCCTTAAGTTTGAGTGTGTCGTAGTCGATGCAGAGACAAAACTGCCTGTGGGGGCTGTTAACACTATACTAACTTCACGTGTCATTCCTGCTCCCTCACCTATTCCACGCCGGCTGATACCTGTTGATGGAATGGGGCATGCAGATGTGGATGGGAGAATGGCAACTTCAGGAACGTTTACTGTTCTATCATACAATATATTGTCTGAAGCATATGCCTCAAATGATCTATACAATTATTGCCCTTCATGGGCACTTTCTTGGCCATATCGCAGGCAAAATTTGTTACGAGAAATTGTTGGTTATCGTGCAGACATTATTTGTCTTCAGGAGGTTCAAAGTGATCATTATGATGAATTTTTTTCTCCTGAACTGGACAAACATGGATATTATGGACTTTACAAGAGAAAAACAAATGAGGTGTACAGTAGCAACACAAATACAATTGATGGTTGTGCAACATTTTTCCGTAGAGACAGATTTTCACATGTGAAGAAATATGAGGTTGAATTTAACAAGGCTGCACAGTCTTTGACAGAGGCTACAATTCCAACCACTCAGAAGAAAACTGCCTTGAATCGACTGGTTAAGGATAATGTTGCACTTATAGTGGTTCTAGAAGCAAAAGTTAACAATCAGCCATTTGATAATCCTGGGAAAAGACAGCTTCTTTGTGTGGCAAATACTCATGTGAATGTCCCCCAGGATTTAAAGGATGTGAAACTCTGGCAGGTTCATACTCTCTTAAAAGGGTTGGAGAAAATAGCTGCAAGTGCAGACATTCCAATGTTGGTTTGTGGAGATTTTAATTCAGTTCCGGGAAGTGCTCCTCATGCACTTCTTGCAATGGGGAAGGTAGATCCTTCACATCCAGATTTAGCAGTTGACCCACTTAACATTTTACGTCCTCACAGCAAGTTGGTTCATCAGTTACCACTGGTCAGTGCATACTCGTCGTTTGCGAGAACGGTTAGCCTTGGATATGATCAGCATAAAAGGAGACTGGACGGTGGAACAAATGAACCTTTATTCACAAATGTCACTAGAGATTTTATTGGCACTCTAGATTACATATTTTACACAGCGGATTCATTGGTTGTGGAGAAGTTATTGGAGTTACTGGATGAGGAGAGTTTGAGGAAGGACACTGCACTTCCTTCACCTGAATGGTCCTCAGATCACATAGCTCTCTTAGCCGAGTTCCGCTGCTGCAAGAATAAATCTAGGCGTTGA 1803 0.4337 MLSVVRVHLPSEIPIVGCELTPYVLLRRPDKTISTDDVPEIAPLDGHFLRYKWYRVQSDKKVAVCSIHPSEQATLQCLGCVKAKISLSKSYHCSTKCFSDAWQHHRVLHDRAASALNENGNEEEEVFGRFNSTGSGAINSSLSASASSASLTNGSGTPLYPAAVTQRSGETWFEVGRAKTYTPTADDIGHVLKFECVVVDAETKLPVGAVNTILTSRVIPAPSPIPRRLIPVDGMGHADVDGRMATSGTFTVLSYNILSEAYASNDLYNYCPSWALSWPYRRQNLLREIVGYRADIICLQEVQSDHYDEFFSPELDKHGYYGLYKRKTNEVYSSNTNTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTEATIPTTQKKTALNRLVKDNVALIVVLEAKVNNQPFDNPGKRQLLCVANTHVNVPQDLKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVDPSHPDLAVDPLNILRPHSKLVHQLPLVSAYSSFARTVSLGYDQHKRRLDGGTNEPLFTNVTRDFIGTLDYIFYTADSLVVEKLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCCKNKSRR 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00225 600 SUPERFAMILY DNase I-like 246 594 IPR036691 -
Spst7g00225 600 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 162 593 - -
Spst7g00225 600 FunFam Carbon catabolite repressor protein 4 1 219 598 - -
Spst7g00225 600 Pfam Endonuclease/Exonuclease/phosphatase family 253 584 IPR005135 GO:0003824
Spst7g00225 600 CDD Deadenylase_CCR4 252 593 - -
Spst7g00225 600 Gene3D Endonuclease/exonuclease/phosphatase 222 599 IPR036691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00225 Spst-Chr7 1673209 1678978 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00225 278 480 EF-hand Containing Proteins AT5G54130 25.234 1.89e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00225 K12603 - gmx:100819402 1130.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00225 7 1673209 1678978 Spst7g00225 7 1673209 1678978 ECH
Spst1g02602 1 34471375 34476081 Spst7g00225 7 1673209 1678978 PCT