Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02602 ATGCTGAGCGTGCTGCGTGTGCACCTCCCTTCTGATATTCCCATTGTAGGCTGTGAGCTTACGCCTTACGTGCTCCTACGCCGACCTGACAAGACCGTTACCACCGACGATGTCCCCGAAGGCGCCCCGTTAGACGGCCATTTCTTGCGCTACAAGTGGTACCGTGTACAGAGTGATAAAAAGGTTGCCGTTTGTAGTGTACATCCATCTGAGCAGGCCACACTGCAGTGCCTTGGTTGTCTAAAGGCTAAAATACCTGTTGCCAAAAGTTACCACTGCACTCCAAAGTGTTTTTCAGACGCATGGCAGCATCATCGTGTCTTACATGACCGTGCTGCAAGTGCAAGTAATGAAAATGGAAATGAGGAAGAAGAGTTATTTGGGCGATTTAATAATTCTGGATCAATCAATACCACCATATCTGCCTCTGCATCTAGTGCTAGCTTGACAAATGGGTCTGCACCTGTGTATCCAGCAGCCATTACACAACGAAGTGGTGGTGAAACTTGGTTTGAAGTAGGACGATTTAAGACGTATACTCCAACAGCTGATGACATTGGTCATGTCCTTAAATTTGAGTGTGCTGTAGTTGATGCAGAGACCAAACTTACTGTAGGGCATACTAGCACTCTACTAACTTCCCGCGTCATTCCTGCCCCTTCACCTAGCCCACGCCGACAAATATCTGTCGATGGGATGGGACATTTGGATGCTGATGGGCGTATGACATCTTCAGAATCTTTTACTGTTCTATCATACAACATATTGTCTGATGCATATGCCTCAAATGATCTATACAGTTACTGCCCTTCATGGGCTCTTTCCTGGCCATATCGCAGGCAAAATTTGTTACGAGAAATAGTTGGTTACCGTGCTGATATTATTTGTCTTCAGGAGGTTCAAAGTGATCACTATGAAGAATTTTTTTCTCCTGAACTGGACAAACATGGCTATTATGGTCTTTACAAAAGGAAAACAATTGAGGTATACAGTGGCAACATTAATACAATTGATGGGTGTGCAACATTTTTCCGTAGAGACAGGTTTTCACATGTGAAAAAATATGAGGTTGAATTCAATAAGGCTGCACAGTCTTTAACAGATGCTGTGATTCCAACCACTCAGAAGAAAACTGCCTTGAATAGACTAGTTAAGGATAATGTTGCACTGATAGTCGTTTTAGAAGCAAAAGTTAACAATCAGCCTGTTGATAATCCTGGGAAAAGACAGCTTCTTTGTGTGGCAAATACGCATGTAAACGTTCACCAAGATTTAAAGGATGTCAAACTCTGGCAGGTGCACACTCTTTTGAAAGGATTGGAGAAAATTGCTGCAAGTGCAGACATTCCAATGTTGGTTTGTGGGGACTTTAATTCAGTTCCAGGAAGTGCTCCTCATGCACTTCTTGCAATGGGAAAGGTAGATCCATCACATCCTGATTTAGCAGTTGACCCACTTAATATATTGCGTCCTCACAGCAAGTTGGTGCACCAGTTGCCACTGGTCAGTGCTTATTCGTCCTTTGCAAGAACAGTTGGTCTTGGATTTGAGCAGCATAAACGGAGACTAGACAATACAACTAATGAACCTTTATTCACAAATGTAACCAGAGATTTTATTGGCTCTCTAGATTACATATTTTACACAGCGGATTCATTGGTTGTGGAGTCATTGTTGGAGCTATTGGACGAGGAGAGTTTGCGGAAAGACACAGCGCTTCCTTCACCTGAATGGTCCTCTGATCATATAGCAATGTTAGCTGAGTTTCGATGCTGCAAGAATAGATCTAGGCGATGA 1797 0.4329 MLSVLRVHLPSDIPIVGCELTPYVLLRRPDKTVTTDDVPEGAPLDGHFLRYKWYRVQSDKKVAVCSVHPSEQATLQCLGCLKAKIPVAKSYHCTPKCFSDAWQHHRVLHDRAASASNENGNEEEELFGRFNNSGSINTTISASASSASLTNGSAPVYPAAITQRSGGETWFEVGRFKTYTPTADDIGHVLKFECAVVDAETKLTVGHTSTLLTSRVIPAPSPSPRRQISVDGMGHLDADGRMTSSESFTVLSYNILSDAYASNDLYSYCPSWALSWPYRRQNLLREIVGYRADIICLQEVQSDHYEEFFSPELDKHGYYGLYKRKTIEVYSGNINTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAVIPTTQKKTALNRLVKDNVALIVVLEAKVNNQPVDNPGKRQLLCVANTHVNVHQDLKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVDPSHPDLAVDPLNILRPHSKLVHQLPLVSAYSSFARTVGLGFEQHKRRLDNTTNEPLFTNVTRDFIGSLDYIFYTADSLVVESLLELLDEESLRKDTALPSPEWSSDHIAMLAEFRCCKNRSRR 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02602 598 FunFam Carbon catabolite repressor protein 4 1 217 596 - -
Spst1g02602 598 Pfam Endonuclease/Exonuclease/phosphatase family 251 582 IPR005135 GO:0003824
Spst1g02602 598 Gene3D Endonuclease/exonuclease/phosphatase 217 597 IPR036691 -
Spst1g02602 598 SUPERFAMILY DNase I-like 244 592 IPR036691 -
Spst1g02602 598 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 159 591 - -
Spst1g02602 598 CDD Deadenylase_CCR4 250 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02602 Spst-Chr1 34471375 34476081 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02602 K12603 - gmx:100808935 1108.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02602 1 34471375 34476081 Spst1g02602 1 34471375 34476081 ECH
Spst1g02602 1 34471375 34476081 Spst7g00225 7 1673209 1678978 PCT