Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02467 ATGCTTCTCTCACCGTTTCTCGCATTCGTCACTTTCCTTCTCTTCTTCTCACCATCTTCTTCTGTCACTGCGACCTTGAAAACATGCTCTGACATAGTTCCGTTGAAAAATCGAAACGACAAAATCTCCATAACTGATTTTGGAGGTGTTGGCGACGGTCGCACTCTGAACACGAAAGCGTTTAGAGAGGCTGTGTTCCGCATTCAACACCTGCGAAGGCCTGGAGGCACGCTGCTGTACGTGCCTCCGGGGGTGTTCTTAACGGAGAGCTTCAACCTCACCAGCCACATGACGCTTTTTCTCGCTGCTGGTGCCGTTATCAAAGCCACTCAGGAGGTGAAGAATTGGCCTTTAATTGTACCCTTGCCATCTTATGGAAGAGGGAGGGAGCTCCCTGGAGGAAGGTATATGAGTTTTATCCATGGAGATGGACTTACTGATGTGGTGATCACAGGTGAGAATGGGACAATTGATGGACAAGGAGGAGTGTGGTGGAACATGTGGAGGAAGAGAACACTTAAATATACAAGACCAGGCCTTGTTGAATTTGTAAATTCTCAAGATATTGTTATTTCAAATGTGATTTTTAAGAATTCTCCCTTCTGGAATATACATCCAGTTTATTGCAGGAATATTGTGGTTCGATATGTCACAATTTTGGCTCCTCGTGACTCTCCTAATACTGATGGAGTTGACCCAGATTCAAGTTCAAATGTCTGCATAGAGGACTCATTCATGTCTACAGGAGATGATCTTGTGGCAGTGAAGAGTGGGTGGGATGAGTATGGTATTGCATACGGTCGCCCCAGCTCAAGTATCACCATTCGGCGCTTAACTGGATCATCGCCGTTTGCGGGCATTGCTGTTGGCAGTGAAACCTCCGGCGGGGTGGAGAATGTTCTTGCTGAACACATCAACCTCTTCAACATGGGAGTTGGTATCCACATCAAAACCAACGCTGGCAGGGGAGGGCTTATCAAGAACATCACACTGGCTCATGTGTATGTGGAGAATGCAAGGCAAGGAATAAAGATTGCAGGTGATGTAGGGGGTCATCCAGATGACAAGTTTAATCCTAAAGCTCTCCCAGTTGTGAAGGGCATCACAATTAAGAATGTTTGGGGAGTGACGGTTAGCGAAGCAGGTTTGATAAATGGAATAAGAAATTCCCCATTCACAGATGTTTGTTTGTCTAATATCAACTTCCATGGTATGAAAGGACTAAGTCCTCCCAGTTGGAAGTGTTCTGATGTGTCCGGATTTGCTCATCAGGTTAGCCCTTGGCCATGTTCTCAACTGAGCAACCAAGAGCCTGGATCATGTGCCATTTAG 1332 0.461 MLLSPFLAFVTFLLFFSPSSSVTATLKTCSDIVPLKNRNDKISITDFGGVGDGRTLNTKAFREAVFRIQHLRRPGGTLLYVPPGVFLTESFNLTSHMTLFLAAGAVIKATQEVKNWPLIVPLPSYGRGRELPGGRYMSFIHGDGLTDVVITGENGTIDGQGGVWWNMWRKRTLKYTRPGLVEFVNSQDIVISNVIFKNSPFWNIHPVYCRNIVVRYVTILAPRDSPNTDGVDPDSSSNVCIEDSFMSTGDDLVAVKSGWDEYGIAYGRPSSSITIRRLTGSSPFAGIAVGSETSGGVENVLAEHINLFNMGVGIHIKTNAGRGGLIKNITLAHVYVENARQGIKIAGDVGGHPDDKFNPKALPVVKGITIKNVWGVTVSEAGLINGIRNSPFTDVCLSNINFHGMKGLSPPSWKCSDVSGFAHQVSPWPCSQLSNQEPGSCAI 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02467 443 SMART pbh1 270 291 IPR006626 -
Spst6g02467 443 SMART pbh1 326 347 IPR006626 -
Spst6g02467 443 SMART pbh1 297 318 IPR006626 -
Spst6g02467 443 SMART pbh1 209 235 IPR006626 -
Spst6g02467 443 SMART pbh1 236 268 IPR006626 -
Spst6g02467 443 SUPERFAMILY Pectin lyase-like 36 433 IPR011050 -
Spst6g02467 443 Gene3D - 22 423 IPR012334 -
Spst6g02467 443 PANTHER PECTIN LYASE-RELATED 13 436 - -
Spst6g02467 443 Pfam Glycosyl hydrolases family 28 137 419 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02467 Spst-Chr6 57126059 57133317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g02467 7 433 Glycoside Hydrolase AT4G23820 73.770 0.0 666
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02467 - - gmx:100816170 801.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g02467 6 57126059 57133317 Spst6g02467 6 57126059 57133317 ECH
Spst6g02467 6 57126059 57133317 Spst8g00751 8 6931896 6935683 PCT