Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02011 ATGTTGGTGCAGCACAGAGAACCTAGAAATGTTGTTCAGTGTTTCATCGGTATTGTTAGCTGTCATTTCCAGAATCAAACGCGATTTTCGATGCACCTCAAGCTGAGAAGAAAAAGAGTGTGTTGCGTTGTGCTGTCCCTTAACGTGCGCACCCTCGGCGCAGGAAATGGAGGCTCACGCGAGTTCCTTCGTGTCCAAGGCGCGCACCGCTCCATTCTGCTGCAGCGAAAGCGGAGCGTGTTCTCATGGACTTCAAAATCGATCGAGCAATTTCACGACGGGTTAGGGAGGCAGCGGGGCGATGAATCTTCTCGGAGCGAGCATGAGTCGAAGTTTCTCAATGAACTGAAGCATATAAAGTGGAGACCTCCGCATATAGGAACAAAGCAGGATTGGCAAGATAGATTAAACAACATGCGAAAAGGGAGAAAAGAAGTTGAAGTAACAGATAAAGTCGGCGATTTAAACATGGCCTCTGCTCCATTTTATGATGAAAATTCGTACACTCTCAATGTGAAAAATGATATTGATGCCAAGGCTTCTGAATCAATTCCCTCGGTCGAAGGCTTAACTGCTGCGACTGAACACCCCATCCCTCCATCGTCTGTTCTGAAGCAGTTGGCTATAGCTTTTGAGGCTGGAAGGAGAACAAACTCAATGAAAGATTTTGTAGCTTCATCAAGAGGTTCTTCACCTGCCAGAGAGAGGACAGGCTTAAGTCTCTCTTCAATGAAGGCTTTAGTGTTGCGTGAAAAGGAGGGCAAACTAACCTCTGAGTATAGTAGCGATGAAAAAGTTCTGTATTTGATTAATTCTTTGTTTGATCCAGAGGGAAAGCTCCTTAGAAGGACGATAAACTCTGATCCAGAGAAAACTTCCAAATTATCTTTCCCAAGAGATATTCATGGTGCTCCTCCTGAAAGCTTAGTTGCTAAGCTAGCTGAAGTAATTGGAAACTTCAAGACGCTTCAAGAAATGGCTCTTTTTTGGTGCAGGGTTGTTGCTGAACTGAGAAAACATTGGTCCGAAGAGAAACATTTACCTGGAGTCCCCCCAGATGACATTCCAGATCTGAAGTTTTGTCTTCTTTATCAAAAAATTCAAGTCATTAACTGTTGCATTTCTCGGAAAAGGCGCTATAATATTGCCACTGAATCACTAAACTCTATGATGGAAGAAGCTAATTTAAATACATTAGAACCAGAAAAGTACGCAGGTAAAATTCCTGAAAGCCCTTTATTATATGCAAGGTTAAGAACTGGAGAGCTTGTTCTTCGACTTGGTGCTGATTGCCCATCTGGAGATCTGATGTTACTGGAAACGGGCGAGCCTGCATACTCTCCTGTCACCCAGGAGGGACCCTTGCTTACAGAAGATTTGATCAAAGAGACAGAGGAGTTTGTGCTGCGGACAGGAAGTGTTGGTGCTGGATGCTCTCAACTCCTCTCTGATATGCAGGCTTTCAAGGCTGCAAATCCTGGTTGCATTTTGGAAGATTTTGTGAGATGGTACTCTCCTCCTGACTGGACTGAAAATGAGGGAGGTTCTGAGGATGGAGATTCTCTTCATTGTGGTGAGTCAATGTCTACCAGAGGTCAACTAAGTCTACGAATGCAAAAAGAAGGTAATTTGTGGCGTGAATTATGGGAAACATCTAAATCAGTTCCAGCTGTTAAACAGGCACCTCTCTATGATGAGGATTTGGCAGTGGAGGGTATTCTAGATGCATTTGAAGACATCCAGCCTTCAGAGCTTTTTGAACAGCTGTTTGTTTCTCTTCTCGGTTCAGGATTTGCAATTGCTGAAAATAGGCTCTCTCGTGATGCTGACATTTCAAAATTGTTCAATGACTGCAAGGAGTACACAGTTGCAGCTTGTCAAAGCAACAGATTCATTGAGAAACTCGATGAGCTTGTTCAGATGTATGAAATGGTGGAGAAAATGTTACTGAATCCAGATGAGGCACAGAAGATGATGAAGCTGATGGAAGAATCAACTATGACTACTGGTGAACCAAAACGCCGGATGTCTACTGGTGAACCAAAACACCGGTTTAAGCAAATTAGTCATATCTTCGGTGGTAAAGATAAACCATTGGCCAGGTCTGTCAGGAAAGAAGAGGTAGATGAAAAAAAGTTGGTTCGCCATTCTTTCTCAAGTTTCTTTGACAACAGCAAGTCATCTTTATTTTCAAAAAAGCCTCCCAGACCTGGAAACCTATTATACCCTGTTGAACAAAATCTCTCTCTGGAAAGTGATTGGACAATTGTTTAG 2274 0.4314 MLVQHREPRNVVQCFIGIVSCHFQNQTRFSMHLKLRRKRVCCVVLSLNVRTLGAGNGGSREFLRVQGAHRSILLQRKRSVFSWTSKSIEQFHDGLGRQRGDESSRSEHESKFLNELKHIKWRPPHIGTKQDWQDRLNNMRKGRKEVEVTDKVGDLNMASAPFYDENSYTLNVKNDIDAKASESIPSVEGLTAATEHPIPPSSVLKQLAIAFEAGRRTNSMKDFVASSRGSSPARERTGLSLSSMKALVLREKEGKLTSEYSSDEKVLYLINSLFDPEGKLLRRTINSDPEKTSKLSFPRDIHGAPPESLVAKLAEVIGNFKTLQEMALFWCRVVAELRKHWSEEKHLPGVPPDDIPDLKFCLLYQKIQVINCCISRKRRYNIATESLNSMMEEANLNTLEPEKYAGKIPESPLLYARLRTGELVLRLGADCPSGDLMLLETGEPAYSPVTQEGPLLTEDLIKETEEFVLRTGSVGAGCSQLLSDMQAFKAANPGCILEDFVRWYSPPDWTENEGGSEDGDSLHCGESMSTRGQLSLRMQKEGNLWRELWETSKSVPAVKQAPLYDEDLAVEGILDAFEDIQPSELFEQLFVSLLGSGFAIAENRLSRDADISKLFNDCKEYTVAACQSNRFIEKLDELVQMYEMVEKMLLNPDEAQKMMKLMEESTMTTGEPKRRMSTGEPKHRFKQISHIFGGKDKPLARSVRKEEVDEKKLVRHSFSSFFDNSKSSLFSKKPPRPGNLLYPVEQNLSLESDWTIV 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02011 757 Pfam Rab3 GTPase-activating protein catalytic subunit 426 578 IPR026147 -
Spst6g02011 757 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Spst6g02011 757 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 119 738 IPR045700 GO:0005096|GO:0043547
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02011 Spst-Chr6 19953031 19964430 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02011 K18270 - gmx:100800515 1071.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g02011 6 19953031 19964430 Spst6g02011 6 19953031 19964430 ECH
Spst6g02011 6 19953031 19964430 Spst8g00885 8 7832027 7842330 PCT