Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01954 ATGGATTCCCCACAATCTGTCGTGTCACCCTTCAGGAGCTCAGTTTTGGGTGACGGTGAGAAGCACAAGTCTGAAGTTTTCTCAGGAAACTCTAGTCCCTTGTCCAAGGACATTGAAGTGAATGGGAAGGAAGTTGTAATGTCAAATGTAGAGGAGTGTCTTGGAGTGCTTGATGTTTACATACATCAGGCCAGGGACATTCAAAACATTTGCATATACCACAAGCAAGATGTTTACGCTAGGATTTGCCTGACCAGTAATCCTGAGAACACTGTGTCTACCAAAACCATCAATGGAGGAGGAAGGAACCCTGTGTTTAATGAGAATCTTCAAGTCAATGTTAGAACTGTTGATGCTTCTCTCAAATGTGAGATATGGATGCTTAGCAGGGTGAAGAATTATCTTGAAGACCAGTTGCTTGGTTTTACTTTGGTGCCTTTGTCTGAAGTACTAGTGCAGAATGGGAAACTGGAGAAAGAGTTCTCTCTTTCTTCAACTGATCTATTCCATTCTCCTTCAGGTTTTGTTCAGTTGTCACTTTCTTACACGGGTGCTTCACCCGATGTTATGGCAATTTCTGCAATGCCAAGCAAGGTGGCCACAGGTGCTCCTGTTCAGGATTCGGAAACATCCGAATCTCTGGCCCAGGAATTAGACAAAATTGAGTTCCCAGATCCCAAGATTGCTAATGAAGACCACTTGATGGTTTCAGAATACTTTGGCATTCCATGTGAAGAGACTCAGTGCTCTGACAGCCTGGCTACTTCTGATGCCGAAAATCGCAGTTGTGAAGCCGGTGTTCGGCTTGTGGAAAGCTTCTCAGCGTGCAGTGGTGAGTCTGTTCAGCCTCCTAAGGTTGATTCCCCACCCAGCAGTGTGTCAACTAATGGGGTTTCTTCCCCTTCTGTGCCTGCAAGCTCAGAATCATCTGATGCTGCTGCTTCTAAGTCTCCCTGTCAGGAGCAAGTTTCTGGCACCAAAGAGGACAAAAATGAGGATGTCAAAGATGGTGACAGTGATTCCTCAAGTGGGGTTCCTAGTGACTCATTCCCTAAGCCTGTTGTGACTGTGAACATTGAGCCTGAGCCAAAGGTGGTGCAGCAGGATATAGTAGACATGTACATGAAAAGCATGCAGCAATTCACTGAGTCACTAGCAAAAATGAAGCTCCCTATGGACTTTGAAAGTGAACCAACTAGCTCAGGAAATTCAACCACTGAGCAGAAACTACAGCCATCAAAGAGCAATAATTCCCGTGTGTTCTATGGCAGCCGAGCTTTCTTCTGA 1287 0.4538 MDSPQSVVSPFRSSVLGDGEKHKSEVFSGNSSPLSKDIEVNGKEVVMSNVEECLGVLDVYIHQARDIQNICIYHKQDVYARICLTSNPENTVSTKTINGGGRNPVFNENLQVNVRTVDASLKCEIWMLSRVKNYLEDQLLGFTLVPLSEVLVQNGKLEKEFSLSSTDLFHSPSGFVQLSLSYTGASPDVMAISAMPSKVATGAPVQDSETSESLAQELDKIEFPDPKIANEDHLMVSEYFGIPCEETQCSDSLATSDAENRSCEAGVRLVESFSACSGESVQPPKVDSPPSSVSTNGVSSPSVPASSESSDAAASKSPCQEQVSGTKEDKNEDVKDGDSDSSSGVPSDSFPKPVVTVNIEPEPKVVQQDIVDMYMKSMQQFTESLAKMKLPMDFESEPTSSGNSTTEQKLQPSKSNNSRVFYGSRAFF 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01954 428 MobiDBLite consensus disorder prediction 277 322 - -
Spst6g01954 428 SMART C2_3c 56 159 IPR000008 -
Spst6g01954 428 MobiDBLite consensus disorder prediction 323 339 - -
Spst6g01954 428 CDD C2 57 163 - -
Spst6g01954 428 MobiDBLite consensus disorder prediction 396 422 - -
Spst6g01954 428 Pfam C2 domain 55 162 IPR000008 -
Spst6g01954 428 MobiDBLite consensus disorder prediction 392 428 - -
Spst6g01954 428 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 54 185 IPR035892 -
Spst6g01954 428 Gene3D C2 domain 51 212 IPR035892 -
Spst6g01954 428 MobiDBLite consensus disorder prediction 277 356 - -
Spst6g01954 428 ProSiteProfiles C2 domain profile. 42 161 IPR000008 -
Spst6g01954 428 PANTHER EXPRESSED PROTEIN 1 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01954 Spst-Chr6 19114082 19115368 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01954 - - gmx:100796499 730.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01954 6 19114082 19115368 Spst6g01954 6 19114082 19115368 ECH
Spst6g01954 6 19114082 19115368 Spst8g00942 8 8334153 8335424 PCT