Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01500 ATGAAAGAGGAATGGATAGTGGAGGATTGTCCTGGGAATATAGGAGATATGTTTAATTGTTTGAAGGTTGGTGTGCCCAGTTACTCGCATGAAAGATCAACCTATGGTGTGAATTGGGCGAAACTCGCGGAGAAAGGGAATCGAATAAACATGTTTTTCAGTGGCGATTCCTCTACTCGTAAGCGTGTTGATTTAGGCGGTCGCAGCTCGAAGGAACGGGATAGAAAGAATCTTCTCGAACAGACGCGATTGGAGCGGAACCGGCGCTTGTGGTTGCGCCAGCAGAACTCTGCTGCACTCAGGATTCAGTCATTTTGCAGCTATGGTTGCACTTTAATAGCCTTGATTTTGGTAGTGAGAGTTAAGCTGGTTGTGGCCATTTCAATTGCTGTTTTTAAATCTAAACTGCAGCTAGGGAGAAAAGTAGTCAGAACAGAACAGTCTAAACTACGAGTAAAATTCCGTAGCATATATGGGAACAACTGCCAGAATCTAGACAGGAATGCTTTTGGTCCAGATTCTGATTTCCTCCGTCAGTTCCTCTATTTCTTTAATGCAGAAAATATTGATGATTTTTTAATTCTTGTGCAAATTTGCCGATTGCTTCAACAGTTTGTTCAAGAGAGTGAAGAATGGGGGTTTGAGAGGTTGGGGTGGGTGGGAGATTATCAGATGACAATTGTGCCATTATTGGAAAAACGTGCCTACACTGCCAGTGGCTTCCCCCTTGCTACTGGAGACTCCAAATCCAGAGAAAGCCACAAGAATGCATTGGTGAGGATGAGCTTCGGGAATGACGGTGGTGTTGCTCTGTCACATGGCGGGAGGAGTGGTTGGGGAGTGGAGATGAGGAACAAAAGTGATGTGTACAAGGAAGGTGACATGGATGAATGGTCGGTGAGGGTAGAGATTAAAATGTATGCAACAGGGGATGTTGTCCGACTTTTTGCTGGTGAGGATTACTCAAACAGATGTGCTTTGGTGAACTACCGAGTGAAGCAATTTGTATATACTTGTATTCGTGCTGTACATCAGAATAGGTATCAGTTGAAGGATCAGCTTTTATTAACTCTGAAGGAATCTACTGCATCAGCTATTCCTTTATTGGAAGTCTTAGTATTGTTGATAGATCCCAAGCTACCATGGAGCTGTAAGATAGTAGGATGTCTGTCTCAAAACAATGCATTTAGTCTACTTAGAGAAATTATTCTTACAGGAAAGGATAATGCTGAAAATTGTGTTTACAGTGAAAAAGAATCATCATTGGAGCGTGTGCTTACTGTTCTAATATGCCACATTGGTCAGAAGCCATGTATCTGTTCACCTACTGATCCAGCATATAGCTTCTCACTACAGATCCTTACAATTCCTTTCTTGTGGCATGTTTTTCCAAACTTAAAGCAGGTATTTGCAAAGCAGGGATTGGGCCAACATTACATTCATCAGATGGCAACATGGGTGCCAAATCTGATTAATTCTCTTCCTATGGATATATCAGAAGAATTTCCTACCTATGCCTGTCTTCTCGGAAATATATTAGAAACTGGTGGAATTGCTTTGTCTCGACCTGACTGTTCCTATGATATGGCTATAGACCTTGCTGCTGTTACTACATTTTTGCTGGAATCATATCCATCTCCAACAAGATCTAATGGTAGAGAGAATTCTAAAATTGCTGAGGATGAAATGACTGGGGAAGATGAAGTCATGGAAGCAGCTTTGGATAGAAAATTGAATCAACAAATTTGTAATGCCATAGATACTCGCTTCCTTTTGCAACTGACAAATATTTTATTTAGAGATTTTTCTTCAGCCAATGGTTTGGATTGCGAGCCAGAGGACAGGGAGGTTGCAGCCGTTGGTGCAGTTTGTGGGTTTTTACATGTTATCTTCAACACATTGCCACTTGAAAAGATTATGACTGTACTTGCCTACAGAACTGAGCTTGTTCCTATACTTTGGAATTTTATGAAACGGTGCCATGAGAACAAAAAATGGTCATCTTTGTGTGAGCGGTTATCATACCTCTCAGGAGATGCGCCAGGTTGGCTGTTGCCTCTTTCTGTATTCTGTCCTGTCTACAAGCATATGCTCATGATAGTTGATAATGAGGAATATTATGAGCAGGAGAAACCACTATCACTTAAGGATATTAGAAGCCTTATCATTCTGCTGAGGCAGGCTTTGTGGCAGCTATTGTGGGTGAATCATACCACCTCTACTAATTCAGTAAAATCTGTTCCAGTTAGCACAGCTATTAAAAAGCAATTTGAAGCCATTCAACAGAGGGTTAGCAACGTTGTGTCCGAGCTTCTGTCCCAGTTGCAAGATTGGAACAACAGACGACAGTTTACATCCCCCAGTGATTTCCATGCTGATGGGGTGAATGACTACTTTATCTCTCAGGCTGTTATAGAAAATACAAGAGCAAATGAAATTTTGAAGCAGGCTCCTTTCCTGATACCATTTACTAGCAGGGCTAAAATTTTCACATCTCAACTAGCTGCTGCTAGGCAAAGACATGGATCTCAGGCTGTTTTTACCAGAAACCGGTTCAAAATACGGCGGAATCATATTTTGGAAGATGCATATAATCAAATGAGTCAGCTATCAGAAGAGGACCTTCGAGGACTGATTCGTGTGGCTTTTGTTAATGAATTTGGAGTTGAAGAGGCTGGAATAGATGGAGGTGGAATATTCAAAGATTTCATGGAGAACATCACACGTGCTGCCTTTGATGTGCAGTATGGACTATTTAAGGAAACAGCAGATCACCTGCTTTATCCTAATCCTGGGTCGGGAATGATACATGAACAACATCTTCAATTTTTCCATTTTCTTGGTACTCTTCTTGCAAAGGCTATGTTTGAAGGGATTCTGGTTGATTTACCATTTGCTACATTCTTTTTGAGCAAATTGAAACAAAAGCACAACTATTTAAATGACTTGCCCTCCCTGGATCCAGAATTGTATCGTCATCTTATTTTTCTGAAGTCACGTGTTGATGGCACTGTGTTGTCAAGTTCTAGCTTCAATGTTGGAACGAAAGAGGGGCATTATGAGGGTGACATTTCGGAGTTGGAACTATATTTTGTTATAGTAAACAACGAATACGGAGAGCAAACAGAAGAGGAGCTGCTTCCAGGGGGAAAGAGCATCCGTGTCACTAATGAGAATGTCATTACTTTTATACATCTTGTAGCCAATCACCGCTTGAATTTTCAGATACGTCAACAAAGTTCTCATTTCCTGAGAGGGTTTCAGCAACTTATTCAGAAGGATTGGATTGATATGTTCAATGAGCATGAACTCCAGCTGTTGATATCAGGTTCACTTGACAGCTTGGATGTTGATGATTTGCGGCAGCATACAAACTATGCAGGAGGCTATCATAGTGAGCATTATGTTATTGGGATGTTCTGGGAAGTTCTCAAAGGCTTTTCATTAGAAAACAAGAAAAACTTTTTGAAGTTTGTGACAGGTTGTTCTCGAGGACCATTGCTTGGATTCCGATATCTTGAACCTTTGTTTTGCATTCAAAGGGCCGGTGGTAATGCTTCAGAGGAAGCTGTTGACCGACTACCGACATCAGCTACCTGTATGAATTTACTAAAGCTTCCTCCTTATAAAAGTAAAGAGCAACTGGAAACCAAATTACTGTATGCCATAAATGCTGACGCTGGCTTTGATTTGAGTTAA 3699 0.4109 MKEEWIVEDCPGNIGDMFNCLKVGVPSYSHERSTYGVNWAKLAEKGNRINMFFSGDSSTRKRVDLGGRSSKERDRKNLLEQTRLERNRRLWLRQQNSAALRIQSFCSYGCTLIALILVVRVKLVVAISIAVFKSKLQLGRKVVRTEQSKLRVKFRSIYGNNCQNLDRNAFGPDSDFLRQFLYFFNAENIDDFLILVQICRLLQQFVQESEEWGFERLGWVGDYQMTIVPLLEKRAYTASGFPLATGDSKSRESHKNALVRMSFGNDGGVALSHGGRSGWGVEMRNKSDVYKEGDMDEWSVRVEIKMYATGDVVRLFAGEDYSNRCALVNYRVKQFVYTCIRAVHQNRYQLKDQLLLTLKESTASAIPLLEVLVLLIDPKLPWSCKIVGCLSQNNAFSLLREIILTGKDNAENCVYSEKESSLERVLTVLICHIGQKPCICSPTDPAYSFSLQILTIPFLWHVFPNLKQVFAKQGLGQHYIHQMATWVPNLINSLPMDISEEFPTYACLLGNILETGGIALSRPDCSYDMAIDLAAVTTFLLESYPSPTRSNGRENSKIAEDEMTGEDEVMEAALDRKLNQQICNAIDTRFLLQLTNILFRDFSSANGLDCEPEDREVAAVGAVCGFLHVIFNTLPLEKIMTVLAYRTELVPILWNFMKRCHENKKWSSLCERLSYLSGDAPGWLLPLSVFCPVYKHMLMIVDNEEYYEQEKPLSLKDIRSLIILLRQALWQLLWVNHTTSTNSVKSVPVSTAIKKQFEAIQQRVSNVVSELLSQLQDWNNRRQFTSPSDFHADGVNDYFISQAVIENTRANEILKQAPFLIPFTSRAKIFTSQLAAARQRHGSQAVFTRNRFKIRRNHILEDAYNQMSQLSEEDLRGLIRVAFVNEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHEQHLQFFHFLGTLLAKAMFEGILVDLPFATFFLSKLKQKHNYLNDLPSLDPELYRHLIFLKSRVDGTVLSSSSFNVGTKEGHYEGDISELELYFVIVNNEYGEQTEEELLPGGKSIRVTNENVITFIHLVANHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDVDDLRQHTNYAGGYHSEHYVIGMFWEVLKGFSLENKKNFLKFVTGCSRGPLLGFRYLEPLFCIQRAGGNASEEAVDRLPTSATCMNLLKLPPYKSKEQLETKLLYAINADAGFDLS 1232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01500 1232 CDD HECTc 850 1230 IPR000569 GO:0004842
Spst6g01500 1232 Pfam HECT-domain (ubiquitin-transferase) 907 1232 IPR000569 GO:0004842
Spst6g01500 1232 Gene3D Hect, E3 ligase catalytic domains 852 1110 - -
Spst6g01500 1232 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 59 1232 IPR044611 GO:0000209|GO:0061630
Spst6g01500 1232 FunFam Putative Ubiquitin-protein ligase E3C 1015 1075 - -
Spst6g01500 1232 SMART hect_3 869 1232 IPR000569 GO:0004842
Spst6g01500 1232 Gene3D Hect, E3 ligase catalytic domain 1114 1231 - -
Spst6g01500 1232 FunFam Putative Ubiquitin-protein ligase E3C 1114 1231 - -
Spst6g01500 1232 Gene3D Hect, E3 ligase catalytic domain 976 1075 - -
Spst6g01500 1232 ProSiteProfiles HECT domain profile. 871 1232 IPR000569 GO:0004842
Spst6g01500 1232 SUPERFAMILY Hect, E3 ligase catalytic domain 841 1224 IPR035983 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01500 Spst-Chr6 14070457 14109283 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01500 K10589 - gmx:100787467 1640.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01500 6 14070457 14109283 Spst6g01500 6 14070457 14109283 ECH
Spst3g02902 3 78663976 78689368 Spst6g01500 6 14070457 14109283 PCT