Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02902 ATGGCACTTATCAATTCAATTCCACGTTGCAGTGTTCCTGGAAAAAGTGAGGGAAAAACAGGAGAAAAGCTTGGGAAAATTCCAAGGCATGAATTGGTCAAGCAGAAGAAGATACGATATATAATGTTCTTCAGCGGCGATCCTTCTACGCGGAAGCGTGTCGATTTGGGCGGCCGCAGTTCGAAGGAAAGGGACCGGAAGAACCTTCTAGAACAGACACGAGTTGAAAGGAACAGGCGCTTGTCGTTGCGCCAGCAGAACTCTTCTGCACTCAAAATTCAGCTACAGAAATGCTTCAGAGGAAGAAAAGCAGTCAAAACTGAACAATCTAAGTTGCGAGAGCAGTTCTATAAAGCATATGGGAAGTATTGCCAGAATGTGGACAGGAATTCTTTTGGTCCAGATTCTGATTTCCTCTGCCAGTTCCTCTATTTCTTTAAGGCAGACAATATCGATGATTTTTTAGTTCTTGTACAAATATGCCAGTTGCTGTGGTGGTTTGTTCAGGATAATGGGGATGTTGTGAAACTTTTTGCAGGGGTAGATTACTCTTCCACACGTGCTTTGGTGAACTACCGAGTGAAGCAATTTGTACAGGCTTGTTTTCATGCTTTGCATCAGAATAGAAATCAGTTAAAAGATCAGCTTTTATTGACTCCTGAGGAATTGAATGTATCAGCTATTCCTTTATTGGAGGTTTTAGTATTGTTAATTGATTCCAAATTGCCATGGAGCTGTAAGATAGTAGAACATCTTTTTCAAAACAATGCACTTGGCCTACTCAGAGAGATCATTCTAACAGGAAAGATTTTTGCCGCAGAGGACCTGAGCCAATTTCACATTCATCAAATGGCAAAGTTTGGGCAAAATCTGATCAATTTGCTACCAAAGGATATATCAAATGAATTTCCTAGCCATGCTTGTATGCTTGGAAATGTATTAGAAACTGCTGGAATTGCTTTGTCTTATCCTGCCTGTTCATTTGATATGGCAGTAGACCTTGCGGCTGTCACCACATTTTTGCTGGAGGCACTCCCATCTGTGAAAACTTTCAATGGTAGAGAAAGTATGCTTTCCTACTGTTCTATAATTGCTGAGGATGATATTACTGGAGATGATGAAGTCATGGAAATAGCTTTAGATAGGAAATTGGAGCAGCAAATTAATAATGCTGTAAATCCTCGCTTCCTTCTGCAACTGACAAATATTCTCTGTAAAGACATTTCATCTGTCAATGGTTCAGATTATGGACCCAATGATAGAGAAGTTACTGCTGTTGATGCGGTTTGTGGGTTTTTGCATGTTACCTTCAGCAAGCTGCCACTTGAACGGATTATGACAGTGCTTGCATACAGAACTGAACTTGTTCTTACGCTTTGGAATTTTATGAAGCGGTGTCATGAGAACCAAAAATGGTCATCACACCTCTCAAATGATGCACCTGGTTGGCTGTTACCTCTGGCTGTATTCTGTCCTGTCTACAAGCACATGCTTATGATTGTTGATAATGAAGAATTTTACGAGCAGGAGAAACCACTTTCGCTGAAGGATATAAGAACACTCATCATTATATTGAGACAGTTGGAGATGGTGATGGTCACACAAACATCAATGGAACCTTCAGCGACGGTGATGGTAGTTTTGGACGACAGTGACAGTGATGCGAGTTTCGGTGTGAGGATGGTGATAGGAGGGTCAGACATGGAGATACTAGGGTTGATGACCACTGGCTATGGCAATAGGAGAGTAATGGAGCTTGTTGGGGTTGCAATTGCAGAGATGGCAAAATGGTTATCATTCAATCCTAGGGGAAATGGGGTTGTAAAACCAAACCACACAGACTCCATTCAGGATCGATGTGACCCACAATCCTTCTATTTTGGGGGCAAAATCATGATCCGGCAACAATCTGCAAAATCTCCATGCCAACCACCGAGTTTGCTCACTTGGTCATCAAAACTTGCAACATTGAGCAAGTTTACAGGTCTAGTTCTGTGGCAGCTACTGTGGGTGAATCATACCACATCTGCTAATCCAGTAAAATCAGTTCCAGTTAGTTCATCTAGTAAGGGGCAGTTTGTTCAGGCCATTCAACAGAGGGTTAGCATTGTAGTCTCCGAGCTTCTCTCCCAGCTGCAAGATTGGAACAATAGACGGCAGTTTACATCCCCCAGTAACTTCCATGCTGATGGTGTGAATGACTTATTTATCTCTCAGGCTCTAATAGAAAATACACGAGCAAATGAAATATTGAAACAGGCCCCTTTCTTGATACCATTTACGAGCAGGGTTAAAATATTCTCTTCTCAACTAGCTGCTGTAAGGCAAAGGCATGGATCTCAGGCTGTATTTAGACGGTTCAGAATAAAACGAGACCGCATTTTGGAAGATGCTTATAATCAAATGAGTCAGTTGACAGAAGATAGCCTTCGAGGATCGATCCGTGTGACTTTTGTCAATGAATTTGGAGTTGAAGAGGCTGGAATTGATGGTGGTGGAATATTCAAAGATTTCATGGAGAACATCACACGTGCAGCCTTTGATGTGCAGTATGGATTATTTAAGGTCAGAAATGTTGTGCAATTGTTAATATTTAACGGGAAGGTTATTTTCTACTCTGTATGTAATTTGACCGCACTAAGAATCAAGGTTATTGAAGTATTACTGAGTGTGAATATGGTTGCAATTGGATTGGAAACAGCAGATCACCTGCTTTATCCTAATCCTGGATCTGGAATGATACATGAACAACATTTCCAATTTTTCCACTTCCTTGGTACTCTTCTTGCAAAGGCTATGTTTGAAGGGATTCTGGTTGATATACCATTTGCTACATTCTTCTTGAGCAAATTGAAACAAAAGTACAACTATTTGAATGACTTGCCCTCCTTGGACCCAGAATTATATCGCCATCTCATTTTTCTCAAGCATTATAAGGGAGACATCTCGGAGTTGGAACTATACTTTGTTATCGTAAATAATGAATATGGAGAACAAACAGAGGAGGAACTGCTTCCTGGAGGAAGGAACCTACGTGTCACTAATGAGAATGTTATTACTTTCATTCATCTTGTAGCCAACCATCGCTTGAATTTTCAGATACGGCAACAAAGTTCACATTTCTTGAGGGGATTTCAGCAACTTATTCAGAAGGATTGGATTGATATGTTTAATGAACATGAACTTCAGCTTCTGATATCAGGTTCACTTGACAGCTTGGATATTGATGATCTGCGGCTGCACACCAACTATGCAGGAGGCTATCATAGTGAGCATTATGTAATTGAGATGTTTTGGGAAGTTCTTAAAGGTTTTTCATTGGAAAACAGGAAGAAATTTTTGAAGTTTGTGACAGGTTGCTCTCGTGGGCCATTGCTTGGTTTCCGAAATCTTGAACCTTTGTTTTGTATACAAAGGGCTTCCAGCAATGCCGCAGAGGAATCACATGACCGATTACCGACATCAGCTACTTGTATGAATCTACTAAAGCTTCCGCCTTATACAAGTAAGGAGCAATTGGAAACCAAATTATTGTATGCCATAAATGCCGATGCTGGCTTTGATTTAAGTTAA 3573 0.4075 MALINSIPRCSVPGKSEGKTGEKLGKIPRHELVKQKKIRYIMFFSGDPSTRKRVDLGGRSSKERDRKNLLEQTRVERNRRLSLRQQNSSALKIQLQKCFRGRKAVKTEQSKLREQFYKAYGKYCQNVDRNSFGPDSDFLCQFLYFFKADNIDDFLVLVQICQLLWWFVQDNGDVVKLFAGVDYSSTRALVNYRVKQFVQACFHALHQNRNQLKDQLLLTPEELNVSAIPLLEVLVLLIDSKLPWSCKIVEHLFQNNALGLLREIILTGKIFAAEDLSQFHIHQMAKFGQNLINLLPKDISNEFPSHACMLGNVLETAGIALSYPACSFDMAVDLAAVTTFLLEALPSVKTFNGRESMLSYCSIIAEDDITGDDEVMEIALDRKLEQQINNAVNPRFLLQLTNILCKDISSVNGSDYGPNDREVTAVDAVCGFLHVTFSKLPLERIMTVLAYRTELVLTLWNFMKRCHENQKWSSHLSNDAPGWLLPLAVFCPVYKHMLMIVDNEEFYEQEKPLSLKDIRTLIIILRQLEMVMVTQTSMEPSATVMVVLDDSDSDASFGVRMVIGGSDMEILGLMTTGYGNRRVMELVGVAIAEMAKWLSFNPRGNGVVKPNHTDSIQDRCDPQSFYFGGKIMIRQQSAKSPCQPPSLLTWSSKLATLSKFTGLVLWQLLWVNHTTSANPVKSVPVSSSSKGQFVQAIQQRVSIVVSELLSQLQDWNNRRQFTSPSNFHADGVNDLFISQALIENTRANEILKQAPFLIPFTSRVKIFSSQLAAVRQRHGSQAVFRRFRIKRDRILEDAYNQMSQLTEDSLRGSIRVTFVNEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKVRNVVQLLIFNGKVIFYSVCNLTALRIKVIEVLLSVNMVAIGLETADHLLYPNPGSGMIHEQHFQFFHFLGTLLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYKGDISELELYFVIVNNEYGEQTEEELLPGGRNLRVTNENVITFIHLVANHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDIDDLRLHTNYAGGYHSEHYVIEMFWEVLKGFSLENRKKFLKFVTGCSRGPLLGFRNLEPLFCIQRASSNAAEESHDRLPTSATCMNLLKLPPYTSKEQLETKLLYAINADAGFDLS 1190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02902 1190 Gene3D Hect, E3 ligase catalytic domains 740 878 - -
Spst3g02902 1190 Pfam HECT-domain (ubiquitin-transferase) 900 1190 IPR000569 GO:0004842
Spst3g02902 1190 CDD HECTc 786 1188 IPR000569 GO:0004842
Spst3g02902 1190 SMART hect_3 804 1190 IPR000569 GO:0004842
Spst3g02902 1190 FunFam Putative Ubiquitin-protein ligase E3C 1072 1189 - -
Spst3g02902 1190 Gene3D Hect, E3 ligase catalytic domain 1072 1189 - -
Spst3g02902 1190 Gene3D Hect, E3 ligase catalytic domain 954 1033 - -
Spst3g02902 1190 Gene3D Hect, E3 ligase catalytic domains 899 1068 - -
Spst3g02902 1190 ProSiteProfiles HECT domain profile. 806 1190 IPR000569 GO:0004842
Spst3g02902 1190 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 899 1190 IPR044611 GO:0000209|GO:0061630
Spst3g02902 1190 FunFam Putative Ubiquitin-protein ligase E3C 954 1033 - -
Spst3g02902 1190 SUPERFAMILY Hect, E3 ligase catalytic domain 782 1182 IPR035983 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02902 Spst-Chr3 78663976 78689368 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02902 K10589 - gmx:100776303 876.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02902 3 78663976 78689368 Spst3g02902 3 78663976 78689368 ECH
Spst3g02902 3 78663976 78689368 Spst6g01500 6 14070457 14109283 PCT