Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02901 ATGGCTTCTCTTGCTCTGCAATTCTCCCCACTCTCTTCTTCTCTCTTCTCCAAACCCTTCCCTTTCACCCAACATCCCCACAGCCACAAGCGCACGTCAACTCTCATAGTCAACTCCATAGCATTAACCAATGCACAGAACAAAGAGAGAGCCAAGCTCAAGAAGATCTTCGAAGAAGCCTACGAGAGATGCCGCACTGCTCCCACCGAAGGTGTCTCCTTCACCCTCGAAGACTTCACTGCTGCTCTCGACAAATATGACTTTGATTCTGAAGTTGGTTCCAAGGTTAAAGGGACTGTGTTCTACACGGATAACAATGGAGCAGTTGTTGATATTACTGCAAAGTCCTCGGCGTATTTGCCACTGCAGGAAGCGTGCATCCACAGGGTTAAGCATGTGGAAGAAGCGGGCATAGTTGCTGGGTTGAGAGAGGAGTTTTTGATCATTGGTGAGAATCAAGCGGATGATAGTTTGATCTTGAGTTTAAGGTCTATCCAGTATGATCTTGCATGGGAACGTTGTAGGCAGCTTCAAGCAGAAGATGCTGCTGTAAAGGGTAAGATTGTAGGGATGAACAAAGGTGGAGTGGTGGCTGAGGTGGAAGGGCTTAGAGGGTTTGTTCCATTGTCACAATTATCAACGAACTCGAATATAGAAGAGCTTCTCGATAGGGAGCTTCCCCTAAAGTTTGTGGAGGTGGATGAGGAACAATCTAGACTTGTCCTCAGTAACCGCAAGGCCGTAGCTGGCAACCAGGCACAGCTAGGCATTGGTTCAGTGGTTACGGGCTCTGTTCAAAGTCTGAAGCCATATGGGGCCTTCATTGACATTGGTGGAATTAATGGCCTCCTTCACGTTAGTCAGATCAGTCATGACCGAGTAACTGATATCTCAACTGTTCTTCAACCTGGTGACATATTAAAGGTGATGATCTTAAGTCATGACCGTGAGAGAGGTCGAGTAAGTCTTTCCACTAAGAAGTTAGAGCCCACTCCTGGAGATATGATCCGCAATCCGAAGGTTGTATTTGAGAAGGCTGAGGAGATGGCTCAAACATTCAGACAGAGAATAGCCCAGGCAGAAGCTATGGCTCGAGCTGACATGCTTAGGTTCCAGCCTGAGAGTGGATTGACTCTCAGCGGTGATGGGATCCTGGGACAATTTACTTCAGACTTGCCTGAAGAGGGACTGGATCTAAGTGAGGTACCACCAGCTGAAGAATTATGA 1227 0.4743 MASLALQFSPLSSSLFSKPFPFTQHPHSHKRTSTLIVNSIALTNAQNKERAKLKKIFEEAYERCRTAPTEGVSFTLEDFTAALDKYDFDSEVGSKVKGTVFYTDNNGAVVDITAKSSAYLPLQEACIHRVKHVEEAGIVAGLREEFLIIGENQADDSLILSLRSIQYDLAWERCRQLQAEDAAVKGKIVGMNKGGVVAEVEGLRGFVPLSQLSTNSNIEELLDRELPLKFVEVDEEQSRLVLSNRKAVAGNQAQLGIGSVVTGSVQSLKPYGAFIDIGGINGLLHVSQISHDRVTDISTVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKVVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSGDGILGQFTSDLPEEGLDLSEVPPAEEL 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02901 408 FunFam 30S ribosomal protein S1 254 333 - -
Spst3g02901 408 Coils Coil 343 363 - -
Spst3g02901 408 CDD S1_RPS1_repeat_hs4 258 326 - -
Spst3g02901 408 Gene3D - 254 330 IPR012340 -
Spst3g02901 408 CDD S1_RPS1_repeat_ec2_hs2 181 245 - -
Spst3g02901 408 ProSiteProfiles S1 domain profile. 93 163 IPR003029 GO:0003676
Spst3g02901 408 FunFam 30S ribosomal protein S1, chloroplastic 175 251 - -
Spst3g02901 408 ProSiteProfiles S1 domain profile. 181 245 IPR003029 GO:0003676
Spst3g02901 408 ProSiteProfiles S1 domain profile. 258 326 IPR003029 GO:0003676
Spst3g02901 408 PRINTS Ribosomal protein S1 signature 93 111 IPR035104 -
Spst3g02901 408 PRINTS Ribosomal protein S1 signature 229 249 IPR035104 -
Spst3g02901 408 PRINTS Ribosomal protein S1 signature 111 125 IPR035104 -
Spst3g02901 408 PRINTS Ribosomal protein S1 signature 184 200 IPR035104 -
Spst3g02901 408 SUPERFAMILY Nucleic acid-binding proteins 88 188 IPR012340 -
Spst3g02901 408 MobiDBLite consensus disorder prediction 386 408 - -
Spst3g02901 408 Pfam S1 RNA binding domain 179 243 IPR003029 GO:0003676
Spst3g02901 408 Pfam S1 RNA binding domain 257 326 IPR003029 GO:0003676
Spst3g02901 408 FunFam 30S ribosomal protein S1 77 174 - -
Spst3g02901 408 SUPERFAMILY Nucleic acid-binding proteins 257 336 IPR012340 -
Spst3g02901 408 SUPERFAMILY Nucleic acid-binding proteins 180 248 IPR012340 -
Spst3g02901 408 Gene3D - 76 173 IPR012340 -
Spst3g02901 408 Gene3D - 174 253 IPR012340 -
Spst3g02901 408 SMART S1_6 256 326 IPR022967 -
Spst3g02901 408 SMART S1_6 179 245 IPR022967 -
Spst3g02901 408 SMART S1_6 91 163 IPR022967 -
Spst3g02901 408 PANTHER 30S RIBOSOMAL PROTEIN S1 41 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02901 Spst-Chr3 78630856 78634070 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02901 K02945 - gmx:100812847 699.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02901 3 78630856 78634070 Spst3g02901 3 78630856 78634070 ECH
Spst3g02901 3 78630856 78634070 Spst6g01498 6 14050109 14054643 PCT