Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01326 ATGGTGCAGTGCTTTGATGGATTGAAGCGGTTGTATACTGCTGTCATAAATTTTTGTGATGCTGATTTGTCCCAGCAGCAGCCTGGAGGTTTACAAAACCCAGAAGCACTTGCAAGAGAAACAGTTTTTAGTGTAAGTGAGATTGAAGCACTGTATGAACTATTCAAGAAGATCAGCAGTACAGTAATTGATGATGGACTAATTACCAAGGATGAATTTCAGTTGGCCTTATTCAAGACAACCAAGAAAGAGAGCTTATTTGCGGATAGGGTGTTTGACTTGTTTGATGCAAAGCATCATGGGATACTTGATTTCAAAGAGTTTGCACTTGCTCTCTCCGTCTTTCATCCCAATGCATCAATTGATGATAAGATTGAGTTTTCTTTCCAATTGTATGATCTCAAACAGCAAGGATTTATTCAAAGACAGGAGTTAAAACAAATGGTAGTGGCCACTCTAGCTGAAGCTGGCATGAATCTTGCAGATGACGTGATTGAAAGCATCATTGACAGGACATTTGAGGAAGCTGATACAAAACATGATGGGAAGATTGACAAGGAAGAATGGAGGAACCTTGTCTTGCAGCATCCTTCCCTTCTTAAAAATATGACTCTTCAGTATCTTAAAGATATTACAACTACATTTCCCAGTTTTATATTTCACTCACAAGTTGACGATGTATGA 684 0.386 MVQCFDGLKRLYTAVINFCDADLSQQQPGGLQNPEALARETVFSVSEIEALYELFKKISSTVIDDGLITKDEFQLALFKTTKKESLFADRVFDLFDAKHHGILDFKEFALALSVFHPNASIDDKIEFSFQLYDLKQQGFIQRQELKQMVVATLAEAGMNLADDVIESIIDRTFEEADTKHDGKIDKEEWRNLVLQHPSLLKNMTLQYLKDITTTFPSFIFHSQVDDV 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01326 227 ProSiteProfiles EF-hand calcium-binding domain profile. 164 199 IPR002048 GO:0005509
Spst6g01326 227 ProSiteProfiles EF-hand calcium-binding domain profile. 120 155 IPR002048 GO:0005509
Spst6g01326 227 FunFam calcineurin B-like protein 3 33 226 - -
Spst6g01326 227 PANTHER CALCINEURIN B 25 226 IPR045198 GO:0005509|GO:0019722|GO:0019900
Spst6g01326 227 PRINTS Recoverin family signature 91 112 - -
Spst6g01326 227 PRINTS Recoverin family signature 138 156 - -
Spst6g01326 227 PRINTS Recoverin family signature 184 204 - -
Spst6g01326 227 Pfam EF-hand domain pair 65 108 IPR002048 GO:0005509
Spst6g01326 227 SMART efh_1 168 196 IPR002048 GO:0005509
Spst6g01326 227 SMART efh_1 87 115 IPR002048 GO:0005509
Spst6g01326 227 SMART efh_1 124 152 IPR002048 GO:0005509
Spst6g01326 227 Pfam EF-hand domain pair 123 191 IPR002048 GO:0005509
Spst6g01326 227 ProSiteProfiles EF-hand calcium-binding domain profile. 83 118 IPR002048 GO:0005509
Spst6g01326 227 Gene3D - 33 227 - -
Spst6g01326 227 SUPERFAMILY EF-hand 34 219 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01326 Spst-Chr6 12253324 12256872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01326 1 227 EF-hand Containing Proteins AT5G55990 81.498 5.43e-133 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01326 K06268 - gmx:100808191 404.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01326 6 12253324 12256872 Spst6g01326 6 12253324 12256872 ECH
Spst3g03339 3 83178033 83185808 Spst6g01326 6 12253324 12256872 PCT