Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03339 ATGCATGAACAGATGCATCCTGACCTGAGCAAAGCAGACAAGAAGAGACTGTGTGGGATTCTAGACTGCCAAAGATTGTCCCCAGAAGTGCGTGGACATGCAGTAAAAAACGAGCTTCTGCCATTAAGAACAGTAGTGCAGCTCCTCTATTTTGAACAAGATAAAGGCTCTAAGGCAACCTCCAGTCACAAACTGTCAAAGCCACATGAGATATTTCTGGGAGCAAAACATAGAGCAGCTACTACAAAAGATACTCAAAGCAAGCATTCTTTAGGCCCAACCAAAGAAGAATTCAACGGAGAAGAAATAAGAGAAAGGGATCACCACAAAAGATCAGATGGTAAGTTGGCATTGGACTTGGAAAAAAAAATGGCTATCAGAGGAGACATTGAAGAGACACAATCTGAGAAGGCCAGGGTTGTGAGAGATGAGAGTAGTTCAAGCGGGAAGGTGGACTTGGATCCTAAAAAAATGATAAGAAGGGCAAGAAGTAGATCAGAACATGGTGTGAAAAATATGCGATTAGGGCTTGGATTGGATTCGAAATCTTCAATGGGATGGGTTTCTCCAATTCAGGAGGAGATCATGGTGCAGTGCCTAGACGGATTAAAGCATTTGTGTGCTGCTCTGGTAAATTGTTGTGATGCCGATTCGTCAAAGCAACCTAGAGGTTTAGAAAATCCAGAAGTTCTTGCAAGAGAGACAGTGTTTAGTGTAAGTGAGATTGAAGCGCTATATGAACTTTTCAAGAAGATCAGCAGTGCAGTGATTGATGATGGACTAATTAATAAGGAAGAATTTCAGTTGGCATTGTTCAAGACGAACAAGAAAGAGAGCTTATTTGCGGATAGGGTGTTTGACTTGTTTGATACAAAGCACAATGGCATACTTGATTTTGAAGAGTTTGCGCGGGCTCTCTCTGTCTTTCATCCCAATGCACCAATTGATGATAAGATTGAGTTTTCATTCCAATTGTATGATCTCAAACAGCAAGGTTTTATTGAAAGACAGGAGGTAAAACAAATGGTAGTGGCCACTCTAGCTGAATCTGGCATGAATCTTTCAGATGATGTGGTCGAAAGTATTATTGACAAGACATTTGAGGAAGCTGATACCAAACATGATGGGAAGATTGACAAGGAAGAATGGCGAAACCTTGTGTTGCGGCATCCATCTCTTCTGAAAAACATGACACTTCAGTATCTCAAAGATATCACCACTACATTTCCCAGTTTTGTCTTTCACTCACAAGTGGATGATACATGA 1266 0.4107 MHEQMHPDLSKADKKRLCGILDCQRLSPEVRGHAVKNELLPLRTVVQLLYFEQDKGSKATSSHKLSKPHEIFLGAKHRAATTKDTQSKHSLGPTKEEFNGEEIRERDHHKRSDGKLALDLEKKMAIRGDIEETQSEKARVVRDESSSSGKVDLDPKKMIRRARSRSEHGVKNMRLGLGLDSKSSMGWVSPIQEEIMVQCLDGLKHLCAALVNCCDADSSKQPRGLENPEVLARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILDFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLSDDVVESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLKNMTLQYLKDITTTFPSFVFHSQVDDT 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03339 421 SMART efh_1 362 390 IPR002048 GO:0005509
Spst3g03339 421 SMART efh_1 318 346 IPR002048 GO:0005509
Spst3g03339 421 SMART efh_1 281 309 IPR002048 GO:0005509
Spst3g03339 421 MobiDBLite consensus disorder prediction 79 116 - -
Spst3g03339 421 PRINTS Recoverin family signature 332 350 - -
Spst3g03339 421 PRINTS Recoverin family signature 378 398 - -
Spst3g03339 421 PRINTS Recoverin family signature 285 306 - -
Spst3g03339 421 Pfam EF-hand domain pair 317 385 IPR002048 GO:0005509
Spst3g03339 421 ProSiteProfiles EF-hand calcium-binding domain profile. 358 393 IPR002048 GO:0005509
Spst3g03339 421 PANTHER CALCINEURIN B 212 420 IPR045198 GO:0005509|GO:0019722|GO:0019900
Spst3g03339 421 Pfam EF-hand domain pair 259 304 IPR002048 GO:0005509
Spst3g03339 421 ProSiteProfiles NPH3 domain profile. 1 55 IPR027356 -
Spst3g03339 421 SUPERFAMILY EF-hand 228 413 IPR011992 -
Spst3g03339 421 Gene3D - 227 421 - -
Spst3g03339 421 FunFam calcineurin B-like protein 3 227 420 - -
Spst3g03339 421 ProSiteProfiles EF-hand calcium-binding domain profile. 314 349 IPR002048 GO:0005509
Spst3g03339 421 ProSiteProfiles EF-hand calcium-binding domain profile. 277 312 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03339 Spst-Chr3 83178033 83185808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03339 196 421 EF-hand Containing Proteins AT5G55990 88.496 3.02e-146 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03339 K06268 - gmx:100791045 448.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03339 3 83178033 83185808 Spst6g01326 6 12253324 12256872 PCT