Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01296 ATGTCGGTTTTGAATTCTCTCTCACACGTTAACAACATGATCAGATCACTGCCCAAGCTCTCACTCCTCTTTTTCTCAGCTAGGAAACCGCATTATCTTGCAACTGCTCAGCGTTTCATATCCCAAGGGAGAACACCAACTTCAAGAGTCAAGATTGGAGTGGCAACCACTGTTTCTATACGATCCAAATCGACCTCAACTATTTCATCTGCAATTGTGTCAGAAACTGCCGCTGGAGATCAAGTTCAAAAGATTAACCTGCTAACATCAACTGATGATAATTATGGTGGTGTTACTGTGGAACTGGATCAGCCTATGGATTCTACAACATTTATCTCAACCCTTAGAGCTTCAGTTTCCCATTGGAAGCAGCTGGGCAAGAAAGGTGTGTGGATAAAATTACCTATTCATTTAGCCAGTCTAGTTGAAGATTTAGTTAAGGAGGGATTTTGGTATCATCATGCAGAACCGAATTATTTAATGCTTGTATATTGGATTCCTGACAGTCCAAGTACTATTCCTCCAAATGCCACACACAGGGTGGGGGTTGGTTCATTTGTCATGAATGAAAAAAAAGAGGTCCTAGTTGTTCAAGAAAATAATGGACTATTTCAAGGAAGTGGAGTCTGGAAATTTCCTACTGGAGTTGTTGATCAGGGAGAAGATATTTGTGTAGCAGCAGTAAGAGAGGTCAAAGAAGAAACAGGGGTTGACTCAGAATTTATGGAAGTATTAGCATTCAGACAAAGTCATAATTCATTCTTTGAGAAGTCAGACTTATTCTTCGTGTGCATGTTGCGGCCTCTTTCTTTTAACATTCAAACACAGACATTAGAAATTCTGGATGCACAGTGGATGCCATTTGAGGAATATGTAGCTCAGCCATTCGTCCAAAGGAGTGAGCTTTTGAAGTACATAAATGATACATGCTTGGCAAAGATGGGTGGACAATATTCTGGATTTTGTCCTGTATCTACGTCATCCAACTTTTCTGATCAAAAGAATTATTTGTACTTGAATGCTGGGACCTTAAAGAGCTCCAATTCTTCTTGA 1053 0.3989 MSVLNSLSHVNNMIRSLPKLSLLFFSARKPHYLATAQRFISQGRTPTSRVKIGVATTVSIRSKSTSTISSAIVSETAAGDQVQKINLLTSTDDNYGGVTVELDQPMDSTTFISTLRASVSHWKQLGKKGVWIKLPIHLASLVEDLVKEGFWYHHAEPNYLMLVYWIPDSPSTIPPNATHRVGVGSFVMNEKKEVLVVQENNGLFQGSGVWKFPTGVVDQGEDICVAAVREVKEETGVDSEFMEVLAFRQSHNSFFEKSDLFFVCMLRPLSFNIQTQTLEILDAQWMPFEEYVAQPFVQRSELLKYINDTCLAKMGGQYSGFCPVSTSSNFSDQKNYLYLNAGTLKSSNSS 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01296 350 SUPERFAMILY Nudix 145 299 IPR015797 -
Spst6g01296 350 PANTHER NUDIX HYDROLASE RELATED 62 346 IPR003293 -
Spst6g01296 350 Pfam Nudix hydrolase domain 88 166 IPR040618 -
Spst6g01296 350 ProSiteProfiles Nudix hydrolase domain profile. 178 310 IPR000086 -
Spst6g01296 350 Gene3D - 85 171 - -
Spst6g01296 350 FunFam nudix hydrolase 2 85 171 - -
Spst6g01296 350 Pfam NUDIX domain 179 299 IPR000086 -
Spst6g01296 350 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 176 194 IPR003293 -
Spst6g01296 350 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 160 176 IPR003293 -
Spst6g01296 350 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 264 288 IPR003293 -
Spst6g01296 350 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 138 156 IPR003293 -
Spst6g01296 350 FunFam Nudix hydrolase 8 180 318 - -
Spst6g01296 350 CDD Nudix_Hydrolase_12 179 310 - -
Spst6g01296 350 ProSitePatterns Nudix box signature. 215 236 IPR020084 GO:0016787
Spst6g01296 350 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 180 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01296 Spst-Chr6 11912178 11922786 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01296 K26956 - gmx:100778567 573.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01296 6 11912178 11922786 Spst6g01296 6 11912178 11922786 ECH
Spst3g03320 3 83065436 83069741 Spst6g01296 6 11912178 11922786 PCT