Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03320 ATGGCACACCCAATTGTGGCATCGGGAGACACCGCCGGTGAAGAGTTCCGAGCACGCACCGTTAAGATCAGAGTGACAACCCTTGTTCCTGTTCCACCCATGTCAACCTCGAAAGATTCATCCCTTACAGAAGTTATGACTACAGAAGATCAAGTGCAAAAGGTTGAACTTCTAACATCGACCGATGATGAACATGGTGGTGTTATTGTGGAAATGGACAAGCCTATGGATTCTGCAACCTTTTTGTCCATCCTCAGAGCTTCAATTTCACATTGGAAACAGCTGGGCAAGAAGGGTGTTTGGATAAAATTGCCTATTCATCTAGTCAGTTTAGTTGAACCTCTAGTCAAGGAAGGTTTTTGGTATCACCATGCAGAACCAAAATATTTAATGCTTGTATATTGGATTCCTGACTCGGCAGATACTATTCCAGCAAACGCCACACACAGGGTGGGTGTCGGGTCATTTGTTGTGAATGAAAAACAAGAGGTCCTAGTGGTTCAAGAAAAGAGTGGACATTTTCAAGGAAGTGGAGCCTGGAAAATCCCTACTGGCGTTGTTGATCAGGGAGAAGATATTTGTGTAGCAGCAGTGAGAGAGGTCAAAGAAGAAACAGGAGTTGATGCTGAATTTGTGGAAGTATTGACATTCAGACAAAGTCACATGTCATTCTTTGAGAAGTCAGATCTATTCTTTGTGTGCCTGCTGCGCCCTCTTTCTTCTGACATTCAAGTACAGGAGGTTGAGATAGAGGCTGCAAAGTGGATGCCATTTGATGAATACGCAGCCCAGCCAATTATGGAAAAGTATGAGCTTATGAAGTACATCAGTGATATCTGCTTAGCAAAGATTGATGGGCAATATTCTGGATTTACTCCTGTATCTACTGCATCAAACTTCTCTAACAAAAATACCTATCTTTACGTCAATGCTGGTGGCCTGAAGAAGAGAAATTCTTTTTGA 963 0.4268 MAHPIVASGDTAGEEFRARTVKIRVTTLVPVPPMSTSKDSSLTEVMTTEDQVQKVELLTSTDDEHGGVIVEMDKPMDSATFLSILRASISHWKQLGKKGVWIKLPIHLVSLVEPLVKEGFWYHHAEPKYLMLVYWIPDSADTIPANATHRVGVGSFVVNEKQEVLVVQEKSGHFQGSGAWKIPTGVVDQGEDICVAAVREVKEETGVDAEFVEVLTFRQSHMSFFEKSDLFFVCLLRPLSSDIQVQEVEIEAAKWMPFDEYAAQPIMEKYELMKYISDICLAKIDGQYSGFTPVSTASNFSNKNTYLYVNAGGLKKRNSF 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03320 320 Pfam NUDIX domain 149 264 IPR000086 -
Spst3g03320 320 ProSiteProfiles Nudix hydrolase domain profile. 148 278 IPR000086 -
Spst3g03320 320 PANTHER NUDIX HYDROLASE RELATED 34 316 IPR003293 -
Spst3g03320 320 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 150 284 - -
Spst3g03320 320 CDD Nudix_Hydrolase_12 149 280 - -
Spst3g03320 320 Pfam Nudix hydrolase domain 58 136 IPR040618 -
Spst3g03320 320 FunFam Nudix hydrolase 8 150 288 - -
Spst3g03320 320 ProSitePatterns Nudix box signature. 185 206 IPR020084 GO:0016787
Spst3g03320 320 Gene3D - 55 140 - -
Spst3g03320 320 SUPERFAMILY Nudix 116 271 IPR015797 -
Spst3g03320 320 FunFam nudix hydrolase 2 55 141 - -
Spst3g03320 320 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 146 164 IPR003293 -
Spst3g03320 320 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 108 126 IPR003293 -
Spst3g03320 320 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 130 146 IPR003293 -
Spst3g03320 320 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 234 258 IPR003293 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03320 Spst-Chr3 83065436 83069741 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03320 K26956 - gmx:100778567 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03320 3 83065436 83069741 Spst6g01296 6 11912178 11922786 PCT