Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01206 ATGGGAAACATGTCAAATGTGGTTGTCCTCTGCTTCTGTCTCTGGACCCTATTGTTTTCTCTGGTATCGTCTGCACCCAATGATGGCTTGCGTAGGATTGGACTGAGAAAGATCAAATTGGATAGCGATGACGTTATGCGGTTGAAGGAATTGCGGTGTTCGGATAGAAATAATGATCTTCAGGACATCCTTGGAGGTGCTGAGGACACCGATATTGTTGCGTTGAAGAATTACTTGGATGCTCAGTACTATGGTGAAATAGCCATTGGTACCCCTCCTCAGACGTTCACTGTGATTTTTGACACGGGTAGCTCTAATTTGTGGGTGCCATCTTCTAAATGTTACTTATCGCTTGCCTGTTACACACATGCTAAGTACAAGTCTAGCAAATCCAGCACCTACACAGAAAATGGGACTTCTGCTGCGATTCAATACGGCAGTGGAGCAATTTCTGGTTTCTTTAGCAATGACAATGTCAGAGTTGGTGACGTAGTTGTAAACAACCAGGCATTTATTGAAGCAACTAGAGAACCTGGAGTTACATTTGTGGCAGCTAAGTTTGATGGTATACTAGGCCTTGGATTTCAAGAGATATCAGTTGGAAATGCTGTTCCAGTGTGGTACAATATGGTTGAACAAGGTGTTATAAAGGATCCAGTATTTTCATTTTGGTTAAATCGTAATCCAGAAGAAGAGAATGGGGGTCAGATTGTTTTTGGTGGCTCTGATCCTGCTCACTACAGGGGCAAACATACTTATGTACCAGTGACAAGAAAAGGATATTGGCAGTTTGACATGGGAGAGGTGCTTATTGCCGGTAAACCGACTGGATTCTGTTCTAGTGACTGTTCTGCAATTGCGGACTCTGGAACTTCTTTGTTGGCTGGTCCAACGACTGTGATTACTGAGATAAATCAAGCAATTGGAGCATCTGGAGTTGTAAGCAAAGAATGCAAGTCTGTGGTCCAACAGTATGGACAAACAATCTTGGCATTGCTCTTAACTGAAGCAAAGCCTGAAAAAATCTGCTCACAAATTGGATTGTGTTCCTTGACTCGTGGTGTTGGCATGGGTATTGAGAGTGTTGTGGATAAGAACGAAAGAAAATCATCGGGTGGCATTCGGGATGCTGCTTGTTCAACATGTGAGATGGCTGTTATTTGGATGCAGAACCAGCTGAGGCAGAATCAGACAGAAGATCGGATAATAGACTATGTCAATGGGCTTTGTGATAAGTTGCCCAGCCCAATGGGACAATCATCCGTTGATTGTGGAAAACTCTCTTCAATGCCTATTGTTTCCTTCACTATTGGTGGAAAAGTTTTTGACCTTTCTCCAGAGGAGTATATACTGAAGGTGGGAGAAGGTCCTGAAGCCCAATGCATCAGTGGTTTCATTGCTATGGATGTGCCTCCTCCTCGTGGCCCTCTATGGATCCTTGGAGATGTCTTCATGGGGAGCTATCACACCATATTTGATTATGGTCAGCAGAGAGTCGGATTCGCTAAAGCTGCATAG 1518 0.4374 MGNMSNVVVLCFCLWTLLFSLVSSAPNDGLRRIGLRKIKLDSDDVMRLKELRCSDRNNDLQDILGGAEDTDIVALKNYLDAQYYGEIAIGTPPQTFTVIFDTGSSNLWVPSSKCYLSLACYTHAKYKSSKSSTYTENGTSAAIQYGSGAISGFFSNDNVRVGDVVVNNQAFIEATREPGVTFVAAKFDGILGLGFQEISVGNAVPVWYNMVEQGVIKDPVFSFWLNRNPEEENGGQIVFGGSDPAHYRGKHTYVPVTRKGYWQFDMGEVLIAGKPTGFCSSDCSAIADSGTSLLAGPTTVITEINQAIGASGVVSKECKSVVQQYGQTILALLLTEAKPEKICSQIGLCSLTRGVGMGIESVVDKNERKSSGGIRDAACSTCEMAVIWMQNQLRQNQTEDRIIDYVNGLCDKLPSPMGQSSVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFIAMDVPPPRGPLWILGDVFMGSYHTIFDYGQQRVGFAKAA 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01206 505 ProSiteProfiles Saposin B type domain profile. 375 416 IPR008139 -
Spst6g01206 505 FunFam Vacuolar aspartic proteinase 379 504 - -
Spst6g01206 505 Gene3D Acid Proteases 243 505 IPR021109 -
Spst6g01206 505 SUPERFAMILY Acid proteases 11 504 IPR021109 -
Spst6g01206 505 CDD phytepsin 73 503 IPR033869 GO:0004190
Spst6g01206 505 PRINTS Pepsin (A1) aspartic protease family signature 285 296 IPR001461 GO:0004190|GO:0006508
Spst6g01206 505 PRINTS Pepsin (A1) aspartic protease family signature 235 248 IPR001461 GO:0004190|GO:0006508
Spst6g01206 505 PRINTS Pepsin (A1) aspartic protease family signature 89 109 IPR001461 GO:0004190|GO:0006508
Spst6g01206 505 PRINTS Pepsin (A1) aspartic protease family signature 478 493 IPR001461 GO:0004190|GO:0006508
Spst6g01206 505 Pfam Saposin-like type B, region 2 316 349 IPR008138 -
Spst6g01206 505 Gene3D - 313 414 - -
Spst6g01206 505 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 25 503 IPR001461 GO:0004190|GO:0006508
Spst6g01206 505 FunFam Lysosomal aspartic protease 69 311 - -
Spst6g01206 505 SUPERFAMILY Saposin 314 414 IPR011001 -
Spst6g01206 505 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 285 296 IPR001969 GO:0004190|GO:0006508
Spst6g01206 505 ProSiteProfiles Saposin B type domain profile. 313 353 IPR008139 -
Spst6g01206 505 ProSiteProfiles Peptidase family A1 domain profile. 83 502 IPR033121 -
Spst6g01206 505 Pfam Eukaryotic aspartyl protease 82 504 IPR033121 -
Spst6g01206 505 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 98 109 IPR001969 GO:0004190|GO:0006508
Spst6g01206 505 Gene3D Acid Proteases 31 241 IPR021109 -
Spst6g01206 505 FunFam Aspartic proteinase A1 313 414 - -
Spst6g01206 505 Pfam Saposin-like type B, region 1 378 414 IPR007856 GO:0006629
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01206 Spst-Chr6 11047765 11051837 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01206 K08245 - gmx:100801598 879.782
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01206 6 11047765 11051837 Spst6g01206 6 11047765 11051837 ECH
Spst6g01206 6 11047765 11051837 Spst3g03237 3 82364522 82365969 ECH