Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00641 ATGGATTTTGAATACATTTTAGGAGGGATTATAGCTTCTACTATGGTGCTTCTGTTTCTTCTATTCGGTTCTGCATCAAAGAAGGAGGCCAAAGGTTCAGTACATGCAGAAAACAATGGTGACAGTATTATAAAAACATCATCAGAAAATGGAAACCACCATCAAGATATTTTAGCAACCACAGACATCATCATTGTCGGTGCTGGGGTTGCTGGCGCAGCCCTTGCTTACACACTTGGCAAGGAAGGAAGGCGAGTGCATGCTATCGAAAGGGACTTGACTGAACCAGACAGGATTGTGGGAGAATTGCTACAACCTGGAGGTTATCTCAAGCTAATTGAGTTGGGTCTCGGAGATTGTGTGGGGGAGATTGATGCTCAGCAAGTATTTGGCTATGCTCTTTACAAGGATGGGAAAAAAACCAAGCTGTCTTATCCCTTGGAAAAGTTTGACTCTGATGTCTCTGGAAGAAGCTTTCACAATGGCCGTTTCATACAGAGAATGCGAGAAAAGGCTTCAACTCTGCCAAATGTAAATTTAGAACAAGGTACTGTCATATCTCTGCTAGAAGAAAATGGAATCATCAAAGGGGTAAGCTACAAAACCAAAAGTGGACAAGAGCTCACAGCTAAGGCTCCCCTCACCATAATATGTGATGGCTGTTTTTCCAACTTAAGACGTTCTCTTTGCAACCCAAAGGTTGACGTACCCTCTCATTTTGTTGGTATGGTCCTAGAGAACTGCAATCTTCCATATGCAAACCACGGACACGTTATCTTGGGTGATCCTTCTCCCATTTTGTTTTATCCCATAAGTAGCACTGAGATTCGGTGTTTGGTTGATGTGCCTGCTGGCCAAAAATTACCTTCCCTTGGTAATGGTGACATGGCTCGTTATTTGAAAACAGTAGTAACTCCTCAGGTTCCCCCAGGATTGCGTGCTTCTTTTATAGCAGCAGTTGACAAAGGAAACATAAAAAGCATGCCAAACAGGAGCATGTCTGCATGTCCTTATCCCACACCTGGTGTCCTTCTCATGGGAGATGCCTTCAACATGCGACACCCTTTAACTGGAGGGGGAATGACTGTGGCTTTGTCTGACATTGTTTTGCTAAGGAACCTTCTTAGACCCCTCCATAATCTGCATGATACGAATGCTCTCTGCAAATATCTTGAATCATTCTACACCCTGCGCAAGCCAATGGCATCTACCATAAACACATTAGCTGGGGCATTATACAAGGTGTTTTGTGCATCCACTGACCCAGCTAGGAAGGAAATGCGTCAGGCATGTTTTGATTATTTAAGCCTTGGAGGTGTTTTCTCAGATGGACCAATATCTCTACTTTCTGGTCTAAATCCTCGTCCATTAAGTTTGGTTCTCCACTTTTTGGCCGTGGCTATATACGGTGTTGGTCGCTTACTCATACCATTCCCTTCTCCAGAACGCATGTGGATTGGAGCAAGATTGATTGCAGATGCGTCTGCTATCATTTTTCCTATTATCAAGGCTGAAGGAATTAGACAAATGTTCTTCCCGGTTACTGTGCCAGCATATTACAGAACACCTCCTGCTAATTTGCATGATTAA 1590 0.4346 MDFEYILGGIIASTMVLLFLLFGSASKKEAKGSVHAENNGDSIIKTSSENGNHHQDILATTDIIIVGAGVAGAALAYTLGKEGRRVHAIERDLTEPDRIVGELLQPGGYLKLIELGLGDCVGEIDAQQVFGYALYKDGKKTKLSYPLEKFDSDVSGRSFHNGRFIQRMREKASTLPNVNLEQGTVISLLEENGIIKGVSYKTKSGQELTAKAPLTIICDGCFSNLRRSLCNPKVDVPSHFVGMVLENCNLPYANHGHVILGDPSPILFYPISSTEIRCLVDVPAGQKLPSLGNGDMARYLKTVVTPQVPPGLRASFIAAVDKGNIKSMPNRSMSACPYPTPGVLLMGDAFNMRHPLTGGGMTVALSDIVLLRNLLRPLHNLHDTNALCKYLESFYTLRKPMASTINTLAGALYKVFCASTDPARKEMRQACFDYLSLGGVFSDGPISLLSGLNPRPLSLVLHFLAVAIYGVGRLLIPFPSPERMWIGARLIADASAIIFPIIKAEGIRQMFFPVTVPAYYRTPPANLHD 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00641 529 SUPERFAMILY FAD/NAD(P)-binding domain 61 437 IPR036188 -
Spst6g00641 529 Pfam NAD(P)-binding Rossmann-like domain 65 91 - -
Spst6g00641 529 Pfam Squalene epoxidase 211 485 IPR013698 GO:0004506|GO:0016020|GO:0050660
Spst6g00641 529 PANTHER SQUALENE MONOOXYGENASE 8 524 IPR040125 GO:0004506|GO:0016126
Spst6g00641 529 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 62 84 - -
Spst6g00641 529 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 355 371 - -
Spst6g00641 529 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 340 355 - -
Spst6g00641 529 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 211 226 - -
Spst6g00641 529 FunFam Squalene monooxygenase 2 55 436 - -
Spst6g00641 529 Gene3D - 54 443 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00641 Spst-Chr6 5816365 5819606 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00641 19 524 Miscellaneous Gene Families AT1G58440 73.123 0.0 768
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00641 K00511 - gmx:100795027 934.095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00641 6 5816365 5819606 Spst6g00641 6 5816365 5819606 ECH
Spst3g00459 3 7702567 7705552 Spst6g00641 6 5816365 5819606 PCT