Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00459 ATGGATTATCAGTATATTCTAGGAGGGATCATGGCTTGTAGTTTCGCGTTTTTTTATCTTGTGTATAGTTTTGGAGCAAAGAAGGTCACGGATTCAAGTTCAATTCATGTAAAAAGTTACGAGAGTGAGAAGAAATCATCAGAAAATGGAATATATTCACACGAGGCTGCAGGAAGTACTGACATCATCATTGTGGGTGCTGGTGTTGCTGGTGCTGCTCTTGCTTACACACTTGGAAAGGATGGACGGAAAGTATATGTGATTGAAAGGGATTTGAGTGAACCTGACAGGATTGTGGGTGAATTGCTACAACCTGGAGGATATTTGAAGTTAATTGAGTTAGGCCTTCAGGATTGTGTGGGTGACATTGATGCTCAACAAATCTTTGGGTATGCTCTGTATAAGGATGGCAAAAATACCAAGCTCTCTTATCCCTTGGAAAAATTTAGCTCTGACATTTCCGGGAGAAGCTTTCATAATGGCCGTTTCATACAGAGAATGCGAGAAAAGGCCTCAGCTCTTCCTAATGTGAATTTAGAACAAGGAACTGTCACATCTCTACTTGAAGAAAAAGGAACCATCACAGGGGTGCAGTACAAGACCAAAAGTGGACAAGAGTTCACAGCAAAGGCTCCCCTCACCATAGTATGTGATGGATGTTTTTCCAACTTGAGGCGTTCTCTTTGCAATCCTAAAGTTGAAGTACCCTCTCATTTTGTTGGTCTGGTATTGGAGAATTGTAATCTTCCATATGCAAATCATGGACACGTGATTTTAGGTGATCCTTCACCCGTTTTGTTTTATCCCATCAGTAGTACTGAGATTCGTTGTTTGGTTGATGTGCCTGGCCAAAAATTACCTTCCCTTGGCAATGGTGAAATGGCCAATTATTTGAAAACTTTGGTAGCTCCTCAGGTTCCTCCAGAACTGTATACTTCTTTTATAGCAGCTGTTGAAAAAGGAAGCATAAGAACCATGCCAAATAGAAGCATGCCTGCCTCACCTTATCCCACACCCGGTGCCCTTCTAATGGGAGATGCCTTCAATATGCGTCACCCTTTAACAGGAGGAGGAATGACTGTGGCTTTATCTGACATTGTTGTGCTAAGGGATCTACTTAAACCCCTTCCAAATCTGCATGATGCTTCTGCTCTTTGCAGATACCTTGAATCATTCTACACCCTGCGCAAGCCAGTGGCATCCACAATAAACACACTAGCTGGGGCATTGTACAAAGTGTTTTGTGCATCTCCTGATCCAGCTAGAAAGGAAATGCGCCAAGCATGTTTTGATTACTTGAGCCTTGGAGGTGTTTTCTCTAATGGACCAATAGCTCTACTATCTGGTCTAAATCCTCGTCCATTGAGTTTGGTTCTCCATTTCTTCGCAGTAGCTGTATATGGTGTTGGCCGCTTGCTCATACCATTTCCTTCTCCAAAACGGATGTGGATTGGAGTTAGGGTGATTTCAAGTGCATCAGGCATAATTTTCCCGATTATTAAGGCTGAAGGAGTGAGACAAATGTTCTTCCCTGCAACTGTGCCAGCATATTACAGAGCCCCTCCTGTTTATTGA 1575 0.4267 MDYQYILGGIMACSFAFFYLVYSFGAKKVTDSSSIHVKSYESEKKSSENGIYSHEAAGSTDIIIVGAGVAGAALAYTLGKDGRKVYVIERDLSEPDRIVGELLQPGGYLKLIELGLQDCVGDIDAQQIFGYALYKDGKNTKLSYPLEKFSSDISGRSFHNGRFIQRMREKASALPNVNLEQGTVTSLLEEKGTITGVQYKTKSGQEFTAKAPLTIVCDGCFSNLRRSLCNPKVEVPSHFVGLVLENCNLPYANHGHVILGDPSPVLFYPISSTEIRCLVDVPGQKLPSLGNGEMANYLKTLVAPQVPPELYTSFIAAVEKGSIRTMPNRSMPASPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRDLLKPLPNLHDASALCRYLESFYTLRKPVASTINTLAGALYKVFCASPDPARKEMRQACFDYLSLGGVFSNGPIALLSGLNPRPLSLVLHFFAVAVYGVGRLLIPFPSPKRMWIGVRVISSASGIIFPIIKAEGVRQMFFPATVPAYYRAPPVY 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00459 524 PANTHER SQUALENE MONOOXYGENASE 12 522 IPR040125 GO:0004506|GO:0016126
Spst3g00459 524 Pfam NAD(P)-binding Rossmann-like domain 64 90 - -
Spst3g00459 524 Gene3D - 53 440 IPR036188 -
Spst3g00459 524 Pfam Squalene epoxidase 210 483 IPR013698 GO:0004506|GO:0016020|GO:0050660
Spst3g00459 524 SUPERFAMILY FAD/NAD(P)-binding domain 60 435 IPR036188 -
Spst3g00459 524 FunFam Squalene monooxygenase 2 54 434 - -
Spst3g00459 524 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 338 353 - -
Spst3g00459 524 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 353 369 - -
Spst3g00459 524 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 210 225 - -
Spst3g00459 524 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 61 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00459 Spst-Chr3 7702567 7705552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00459 61 523 Miscellaneous Gene Families AT1G58440 79.741 0.0 788
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00459 K00511 - gmx:100800329 949.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00459 3 7702567 7705552 Spst3g00459 3 7702567 7705552 ECH
Spst3g00459 3 7702567 7705552 Spst6g00641 6 5816365 5819606 PCT