Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00587 ATGGAAGGGAAGAAAAAAACCACAAAAGGTCTTCTCTTCCTGTCTCTCGCCCTTGCCCTCTCTGTGTCGCTCTCCGCGGCCGCCACCACCCACCCTTTTCAACTCCAAACTCAAACCTTACATCTCCACTCCCTCCCCCATCCACCCACCCTCTCATGGCCCGAATCTGAAGACCTTTCAGAACCCGACCCGGAAGAAGCTCTCTCCCTTAGCCTCCACCATATAGACGCACTCTCCTCTGACCAAAGCCCGGAGCAGCTCTTCCACCTCAGGCTCCAACGCGACGCCAAAAGAGTTGAATCCTTACTCACACTTGCAGGCCTCAACACCAGTCACGCGCACAGATCCGGCTCGGGTTTCAGTAGCTCCATCATATCGGGTCTAGCACAAGGTAGCGGCGAGTACTTCACGCGTATTGGCGTGGGTACTCCTGCTAGGTATGTCTACATGGTCTTGGACACCGGTAGCGACGTCGTGTGGCTCCAATGCGCCCCTTGCCGCAAGTGCTACTCCCAAACCGACCCCGTTTTTGACCCCACCAAATCCCAAACCTACGCCGGAATCCCCTGTGGAGCCCCTCTCTGCCGCAGGTTAGACACTCCCGGTTGCAACAAGAACAAGGTTTGCCAATACCAGGTTTCCTATGGCGATGGTTCCTTCACAGTCGGCGATTTCTCCACCGAAACACTGACGTTTCGAAGGACGAGAGTCACGCGCGTCGCTCTCGGCTGTGGCCACGACAACGAAGGGCTTTTCATAGGCGCCGCTGGTTTATTGGGCCTGGGTCAGGGTAAGTTATCGTTTCCGGTACAGACCGGACGCCGGTTCAACCAGAAATTCTCTTACTGCCTCGTGGACCGTTCCGCCTCGGCCAAACCGTCTTCTGTTGTCTTTGGAGATTCCGCTGTTTCCCGAACAGCGCGGTTCACTCCTCTCCTCAAAAACTCCAAGCTCGACACCTTCTACTACGTGGAGCTTCTCGGGATCAGTGTCGGTGGTGCGCCGGTACGTGGCCTCTCAGCCTCTCTCTTCCGCCTAGATGCCGCCGGAAACGGCGGCGTTATCATCGATTCGGGCACGTCTGTCACGCGGTTGACCCGGCCCGCCTACATTGCTCTCCGGGATGCATTCCGCGTCGGAGCCTCGCGCCTGAAGCGAGCACCGGAGTTCTCGCTCTTTGACACGTGTTTCGATCTTTCCGGGCTCACTGAGGTGAAGGTGCCGACGGTGGTGTTACATTTCCGCGGTGCCGATGTATCACTTCCGGCTACGAATTACTTGATTCCGGTGGATAATAGCGGGAGCTTCTGCTTCGCTTTTGCGGGAACCATGAGCGGTTTGTCCATAATTGGTAACATCCAACAGCAAGGATTCCGGGTCTCGTACGACCTGGCGGGTTTGCGGGTCGGATTTGCACCGAGAGGTTGTGTTTGA 1434 0.5669 MEGKKKTTKGLLFLSLALALSVSLSAAATTHPFQLQTQTLHLHSLPHPPTLSWPESEDLSEPDPEEALSLSLHHIDALSSDQSPEQLFHLRLQRDAKRVESLLTLAGLNTSHAHRSGSGFSSSIISGLAQGSGEYFTRIGVGTPARYVYMVLDTGSDVVWLQCAPCRKCYSQTDPVFDPTKSQTYAGIPCGAPLCRRLDTPGCNKNKVCQYQVSYGDGSFTVGDFSTETLTFRRTRVTRVALGCGHDNEGLFIGAAGLLGLGQGKLSFPVQTGRRFNQKFSYCLVDRSASAKPSSVVFGDSAVSRTARFTPLLKNSKLDTFYYVELLGISVGGAPVRGLSASLFRLDAAGNGGVIIDSGTSVTRLTRPAYIALRDAFRVGASRLKRAPEFSLFDTCFDLSGLTEVKVPTVVLHFRGADVSLPATNYLIPVDNSGSFCFAFAGTMSGLSIIGNIQQQGFRVSYDLAGLRVGFAPRGCV 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00587 477 PANTHER ASPARTYL PROTEASES 20 470 IPR001461 GO:0004190|GO:0006508
Spst6g00587 477 FunFam Aspartyl protease family protein 2 300 476 - -
Spst6g00587 477 ProSiteProfiles Peptidase family A1 domain profile. 135 472 IPR033121 -
Spst6g00587 477 SUPERFAMILY Acid proteases 128 476 IPR021109 -
Spst6g00587 477 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 150 161 IPR001969 GO:0004190|GO:0006508
Spst6g00587 477 CDD cnd41_like 134 476 IPR033873 -
Spst6g00587 477 Pfam Xylanase inhibitor N-terminal 135 300 IPR032861 -
Spst6g00587 477 Pfam Xylanase inhibitor C-terminal 322 472 IPR032799 -
Spst6g00587 477 FunFam aspartyl protease family protein 2 112 298 - -
Spst6g00587 477 Gene3D Acid Proteases 114 297 IPR021109 -
Spst6g00587 477 Gene3D Acid Proteases 298 477 IPR021109 -
Spst6g00587 477 MobiDBLite consensus disorder prediction 46 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00587 Spst-Chr6 5311154 5312587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00587 125 476 Miscellaneous Gene Families AT1G77480 27.720 1.49e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00587 K22683 - gmx:100794269 760.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00587 6 5311154 5312587 Spst4g01977 4 60410024 60411445 PCT