Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01977 ATGGAAGAGAAACTGAAGTACCTTTTTTTCTCTTCATTGTTAACCTTCTTTCTCTGTGTCTCCGCCATTTTGACTGACCCACTTCACTCCCAAACCCTCATCCTCCGTGACCTCCCCAACCCACCCACACTCGTCTGGCCGGAATCCACCACCTCAGGATCCGATCCGGAACCCGACCTTTCCACCCTCTCCGTTCCCCTACATCACATAGACGCACTTTCGCTCAACAAAACCCCCTCCCAACTCTTCCACCTAAGACTCCAACGCGATGCTGCAAGAGTCAAAAGCCTCACTTCCCTCGCCGCGCTTAACCAAACCCGACCCATCACTTCTGGTTCAGGTTTCAGCAGTTCCGTGATTTCGGGTCTCGCAATGAATAGCGGCGAGTACTTCACGCGCCTAGGCGTGGGAACCCCTCCGAAGTATGTCTACATGGTACTCGACACCGGAAGCGACATCGTTTGGCTCCAATGCAAACCCTGCGTTAAATGCTACTCCCAAACAGACCAAATCTTCGATCCCTCAAAGTCTTCATCTTTCGCCCGAATACCCTGCTCCTCCCCTCTCTGTCGCCGCCTCGAATCGCCGGGATGCAATCGGGAAAGCAGCAGTTGCCAGTACGAGGTTTCCTACGGCGACAGCTCTTCCACCTTCGGCGATTTTTCAACGGAAACACTCACGTTCCGACGTGCCCAAGTCCCGGGCGTAGCCCTGGGCTGCGGCCACGACAACGAGGGTCTCTTCGTGGGCGCCGCAGGTTTGTTGGGCTTAGGTCGCGGTGGGTTGTCGTTTCCAACCCAAACCGGAAACCGGTTCAACAACAAATTCTCCTACTGTTTAGCGGACCGAACCGCTTCCACCAAACCGTCTTCAATTGTATTTGGAGACTCGGCCATTTCGCGAACAGCGCGTTACACTCCTATAATTAATAACCCTAAATATGATACCTTTTATTATCTCGACTTACTCAGCATTAGCGTTGGCGGCGCGCCAGTTCGGGGCATTTCAGCCTCGCTCTTTCGGTTCGACTCAACCGGGAACGGTGGGGTGATTATCGACTCGGGGACTTCTGTGACGCGCCTCACGCGCCCTGCTTACGTGGCTCTCAGAGACGCGTTTCGGGTCAGGGCTTCGCATTTGAAGTCCGCGCCCGAGTTCAGCCTTTTCGACACTTGTTACGATCTTTCTGGGTTGTCGGAGGTTAAGGTTCCGACCGTGGTGTTGCATTTTCGCGGTGCTGACGTGTCATTGCCGGCGTCAAACTATGTCATTCCGGTGGATAATAGCGGCAAATTCTGCTTTGCATTCGCCGGAACGAAGAATGGGCTTTCTATTATCGGGAATATCCAACAGCAAGGATTTCGGGTCGTGTTTGATTTGGCGGGTTCTCGGATTGGGTTTGCCCCAAGAGGGTGCGCGTGA 1422 0.5387 MEEKLKYLFFSSLLTFFLCVSAILTDPLHSQTLILRDLPNPPTLVWPESTTSGSDPEPDLSTLSVPLHHIDALSLNKTPSQLFHLRLQRDAARVKSLTSLAALNQTRPITSGSGFSSSVISGLAMNSGEYFTRLGVGTPPKYVYMVLDTGSDIVWLQCKPCVKCYSQTDQIFDPSKSSSFARIPCSSPLCRRLESPGCNRESSSCQYEVSYGDSSSTFGDFSTETLTFRRAQVPGVALGCGHDNEGLFVGAAGLLGLGRGGLSFPTQTGNRFNNKFSYCLADRTASTKPSSIVFGDSAISRTARYTPIINNPKYDTFYYLDLLSISVGGAPVRGISASLFRFDSTGNGGVIIDSGTSVTRLTRPAYVALRDAFRVRASHLKSAPEFSLFDTCYDLSGLSEVKVPTVVLHFRGADVSLPASNYVIPVDNSGKFCFAFAGTKNGLSIIGNIQQQGFRVVFDLAGSRIGFAPRGCA 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01977 473 Pfam Xylanase inhibitor N-terminal 130 296 IPR032861 -
Spst4g01977 473 FunFam Probable aspartic protease At2g35615 110 295 - -
Spst4g01977 473 Pfam Xylanase inhibitor C-terminal 318 468 IPR032799 -
Spst4g01977 473 PRINTS Pepsin (A1) aspartic protease family signature 444 459 IPR001461 GO:0004190|GO:0006508
Spst4g01977 473 PRINTS Pepsin (A1) aspartic protease family signature 136 156 IPR001461 GO:0004190|GO:0006508
Spst4g01977 473 PRINTS Pepsin (A1) aspartic protease family signature 350 361 IPR001461 GO:0004190|GO:0006508
Spst4g01977 473 ProSiteProfiles Peptidase family A1 domain profile. 130 468 IPR033121 -
Spst4g01977 473 CDD cnd41_like 129 472 IPR033873 -
Spst4g01977 473 Gene3D Acid Proteases 113 292 IPR021109 -
Spst4g01977 473 Gene3D Acid Proteases 293 473 IPR021109 -
Spst4g01977 473 PANTHER ASPARTYL PROTEASES 32 466 IPR001461 GO:0004190|GO:0006508
Spst4g01977 473 FunFam Aspartyl protease family protein 2 296 472 - -
Spst4g01977 473 SUPERFAMILY Acid proteases 123 472 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01977 Spst-Chr4 60410024 60411445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01977 120 472 Miscellaneous Gene Families AT1G77480 28.756 1.01e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01977 K22683 - gmx:100808163 770.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01977 4 60410024 60411445 Spst4g01977 4 60410024 60411445 ECH
Spst6g00587 6 5311154 5312587 Spst4g01977 4 60410024 60411445 PCT