Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00577 ATGGCACCAAGATACAGCCGTGCTAAGGGCAAGGTTCTTCCTGTTGTAATAGATATCACGCTCAACCTCCCCCATGAAACTCATGTTGTTCTCAAGGGGATATCAACTGATAAAATAATTGACGTTCGTCGGCTTCTATCAGTGAATATAGAGACTTGTCATACCACCAATTTTTCCCTATTGCATGAGGTGAGAGGGCCGCAGTTGAAGGATACGGTGGACGTGTTCGCACTGAAGCCATGCGTCCTCACTTTAATAGAAGAGGATTATGACGAAGATGGAGCAGTGGCCCACGTCAGATGGCTACTGGACATCGTGGCCTGCACGACGTACTTCGGCCACGCGTCGGCGGGGACGAATGCAAAATCTCAGGCGCCGCCGTCCGCGACGGCAGCGGTTGACGGAGACAGTGAGATAAGCCACTCATGCCCTAGGCTGGGGAGCTTCTACGAGTTTTTCTCTCTTTCACATCTCATTCCTCCTTTGCAATATATCAAGAAAACAGTGAGACGGCGAGTTCCGGAGATATCAGAGGCGGATCATCACTTCTCCTTTGATGTGAAGTTATGTAACGGGAAAGTGGTGCACGTTGAAGCTTGCAGAAAGGGATTTTACAGTATTGGAAAGCAGAAGATATTTAGTCATAACCTTGTTGATTTGTTAAGACGGCTTAGTAGAGCTTTTGATACTGCTTATGATGATCTATTGAAAGCATTTTCAGAACGTAACAAGTTTGGGAATCCCCCTTATGGCTTCAGAGCCAACACATGGCTTGTTCCTCCTGCAACGGCGCAATCACCATCAGTTTTCTTTCCCCTTCCTGTGGAGGATGAAAATTGGGGAGGAAATAGTGGCGGTCTAGGAAGGGATGGGAAGTTTGATTTGATTCCTTGGGCCAATGAGTTTTCGTTTATTGCATCTATGCCTTGTAAAACAGCAGAAGAAAGGCAAATTCGTGATAGAAAAGCATTCCTTCTCCACACCTTATTCGTTGATGTTGCCATTTTGAGAGCTATTAGGGCTGTTAAACATGTAATGGGAGAGTCACATTTATGCAGCTCTGTTACAGAAAATAATATTCTTTACACCGACAGAGTAGGTGACTTGACTATCAGAGTCTTGAAAGATACTTCTGTTGCTAGCTGTAAGGTTGATTCGAAAATTGATGGAGTTGAAATTACTGGAATAAATAAAAAGGATCTAATAGAGCGAAATCTACTGAAAGGAATTACTGCGGATGAGAATACTGCTGCCCACGACATTACCACGTTAGGTGTTGTTGTTGTAAGATATTGTGGTTATGTGGTTTCTGTGAAAGTTGACAGGGGAGAAAATGAAAATAACAACTCTTCATCTTATCAAAGTATTGAATTGTTTGATCAGTCAGACGGTGGTGCCAATGCACTCAACATTAATAGTTTGAGACTACTTCTCAACTCAGCACAGTCGGAGAAGAATAGACTCACTCAGATGCAAATGCCTGAGAGTGAAGAGCTTGAAGTTTCTCAAGCTTTTGTGGAGAGGCTTATTGAAGAAAGCCTTTCTAAGCTCGAAGAAGAGGAACCTAGTTTGGACAATTTCATAAGATGGGAACTGGGAGCATGCTGGATACAACATTTGCAAGACCACAACAATATTGAAAAGGATAAAAAACCATTGTTGGATAAGGCTAAGAATGAAATGAAAGTTGAGGGGCTAGGGAAACCCTTTAAAGCCCTAAAGAATAATAAAAATAAATCTGATCTAAGTAGTGTGAAACTGTCATCTGAAAATTCCAAATCTCATCAGGCATGTGTTTATGGAGAGCCTGAAAGTGCTTCAGTGCCCTCAGTAGAATCAAAACATGAAACAGCTACAGCAGAAAATGAGCTTGTGCTAAAGGGTTTGTTATCTGGAGCAGCTTTTACCCGGTTAAAAGATTCAGGAACTGGACTTCATTGCAAGGTAGCAGATTTTGGCTCGTTGGAACTCTCTCCTGTTGATGGACGCACGTTAACTGATTTTATGCATACTAGGGGTCTACGAATGCGATCTCTTGGACATGTTGTCAAACTTTCCGAAAAATTCTCACATGTACAATCACTTTGTATTATTGAGATGATAGTTCGAGCTTTCAAGCACATCCTGCAGGCAGTGATTGCTGTTATTGACAAGGAGAAAATGGCTACATCCATTGCTGCTGCATTGAATTTGCTGCTTGGTGTTCCTGAAAATAGAGAATCAGATAAGTCATGCAAAATCCACCCCCTTGTATGGAAATGGCTAGAGGTATTTTTGAGGAAGAGATTCGATTGGGATCTTAGCAGCTTGAATTACAGTGATGTGAGGAAGTTTGCAATTTTGCGTGGCTTATGTCATAAGGTACTGGAAGTTGGCATTGAGATTGTTCCAAGGGATCTTGATATGGATTCTCCAATTCCCTTCCACAAATCTGATATTGTCAGCTTGGTCCCAGTTCACAAGCAAGCAGCATACTCATCCGCAGATGGAAGGCAGCTCTTAGAGTCATCAAAAACAGCTTTAGACAAGGGAAAGCTAGAAGATGCAGTCACCTATGGAACAAAGGCTCTTTCCAGGCTTGTAGCAGTTTGTGGCCCCTATAATCGGATGACAGCAGGAGCATACAGCTTACTTGCTGTAGTCTTATATCACACGGGAGACTTCAATCAGGCTACAATTTATCAACAAAAAGCTCTGGATATTAATGAGAGAGAGCTGGGTCTGGATCATCCAGATACTATGAAGAGTTATGGGGATCTTGCTGTTTTCTACTACAGACTGCAACACACAGAGCTGGCTCTGAAGTATGTAAAGCGTGCTTTATATCTTCTGCATCTAACATGTGGCCCATCTCATCCAAACACTGCCGCAACATACATTAACGTGGCTATGATGGAGGAAGGTCTTGGAAATGTACATGTTGCTCTTAGATATCTTCACAAAGCTCTAAAGTGCAACCAAAGATTACTTGGTCCAGATCATATCCAGACGGCTGCAAGTTATCATGCAATAGCAATAGCTCTCTCATTGATGGAAGGATATCCTTTGAGTGTGCAGCATGAGCAAACAACATTGCAAATTCTACGGGCAAAACTTGGCCCAGATGACTTGCGAACTCAGGATGCTGCTGCTTGGCTTGAGTATTTTGAGTCCAAGGCTTTTGAACAGCAAGAAGCTGCGGGAAATGGTACTCAAAAGCCAGATACATCAATCGCTAGCAAAGGCCACCTAAGTGTGTCAGATTTGCTTGACTACATTAGTCCAAGTCACGATCCCAAAGGGAGAGATATTGCAGTAAGGAGAAGAAGTCAGATAACTAAGATGAGGATGGAATCTTGCCAGAACATTGGCTCCACAAGTTCTGACGAATCATGGAAAGAAACTCCAAGAGAGACTTCTGGTGAAGTAATAGTAATACCTGGGCCAAGTGTTGATGTTGATACTGAGCTGGAGACCAACTCAGCACCGGATTCCGAACAGCGCATTTTAGAAAAGACTTCTCATGGAAAACAAGTTTCTGTTGAGCTCTTGTCTGAAGCACATGCTGATGGTGAGGATGGATGGCAACCAGTTCAACGGCCAAGATCATCTGGTTCATATGGTCAGCGACTGAAGCAGAGACGAGCAACAATTGGCAAAGCTTATTATCAGAAAAAGAATGTGGAATCTAGCGTAGACTATCCTTATGCGAAGAGTAGTGATCAGAACAGTAGATATTATATTTTCAAGAAAAGAACAATATCCCATGGGGTTTACGCAGATGATAATACTGTAAACATGTCCCAAGTTACTAAATTTGGAAGGAAAGTGGTGAAAGCTGTTACATACAGGGTGAAGTCCATGTCTGCATCTGAGAAGATTACTGTGAGGGATCCGTCAGAAATTGGTGACAGACTAATCAATTCTTATTCACAACATGGTTCAGTTTCAGCACCGAATGATAATGGTACCGTAAAGACTTCTATAGTTAGTATTGGGAAATCTCCTTCATACAAAGAAGTGGCAGTGGCTCCTCCTGGGACAATATCCAAGTTGCAAGTCTATAATACTCAAAGTGACATTCTTGGTTTTGGCGTGGGCAAACATGAAGAGGAAGATTTTAAAGTACGTGCAAATTCCAACCCAACCCTGGAAGAGGTAAAAAATACGTTAAAAGAGAAGGACAAAAATTCTTTGTCAAATTCTTTACATGGTTCAAATCATACTAATGACTCTGAGAGGAAACAAACACAGTTTACTGATTCTGTACAAGACAATTTGGAGAGTGATAAAAGGGTTGAATCTGTGGATGTTGAGGTTCATGAAGCAGTTGATAATATCATCATGATTGATGCAGTGGATGATCCTGTGGATTCTCACAATTTAGAGGTTAACACTAGCAACACTGGTTGTTTTGAATTCTCTAATCATAGTACTACCATCTCACAAGAAGGTGAAGAGTTAAGAGTCAGTGTTTCTCCATCAAGTCAGGTTGATTCCCCGGGCATCTCATGTAAGAAGTTATCTGCATCTGCTGCTCCATTCAATCCAGCTCCAGGCATTGCACGTACTGCCCCCGTTACCGTGAATACAGCACTTCCTTCTGCTTCTGGTGCTGTTCCACAAATTGGCCCCCCCTGGCCAGTAAATATGAATGTTCTCCATGGACCTGCTACCATGTTACCTGCAGCTACCCAAATGTGTTCCTCTCCTCACCATGCATACCCATCACCTCCACCAAAACCAAACATGATACAACCATTGCCATTTATGTATCCTCCTTATACTCAGCCTCGATCAATACCAACCAACAATTTTCCAGTTACTAGCAGCGCATTTCATGTCAATCAGTTCACATGGCAATGCAATATGAACCCAACTGTATCTAATTTTGGTCCCAATGTGGTATGGCCTGGTTGTCATGCCGTGGAATTTCCTGTTCCAGCACCTAGCATCAAACCAATCTCTGATCCCATTTTGGAGCCACAAAGACAGTGTCATGTTTCAAAAAATTCAAGTTCAGCTTTTGTTTTACCAGATGGCATTACTAATGTCAGTGGATACAAGAAAGAGTTGCAACCTTTAGAATCAGAGACTAATGAGGATGAAGTGGGTGGAGTTCACACAGAAAGTGTAAAGGAAAATGGAAATCCTAATTTTAACGGGTTTGAAAATGCTGGGGACAAACCCAATAATAACATTGGCTTGAATAACATTAGCAGAAGTGAAAAGAACATTGATGGTGAGAAAACCTTGAGCATTTTGATTAGGGGAAGAAGAAACCGGAAGCAGACACTAAGAATGCCAATAAGTTTGCTAACTAGACCCAATAGCTCACAGTCTTTTAAGGTTGTTTATAACCGTGTAGTCAGAGGAAGTGATGTACCCAAGTCCATTAACTTGTCTTCTAGAAGAGATTGTACAGCTACTGCTTAA 5415 0.4209 MAPRYSRAKGKVLPVVIDITLNLPHETHVVLKGISTDKIIDVRRLLSVNIETCHTTNFSLLHEVRGPQLKDTVDVFALKPCVLTLIEEDYDEDGAVAHVRWLLDIVACTTYFGHASAGTNAKSQAPPSATAAVDGDSEISHSCPRLGSFYEFFSLSHLIPPLQYIKKTVRRRVPEISEADHHFSFDVKLCNGKVVHVEACRKGFYSIGKQKIFSHNLVDLLRRLSRAFDTAYDDLLKAFSERNKFGNPPYGFRANTWLVPPATAQSPSVFFPLPVEDENWGGNSGGLGRDGKFDLIPWANEFSFIASMPCKTAEERQIRDRKAFLLHTLFVDVAILRAIRAVKHVMGESHLCSSVTENNILYTDRVGDLTIRVLKDTSVASCKVDSKIDGVEITGINKKDLIERNLLKGITADENTAAHDITTLGVVVVRYCGYVVSVKVDRGENENNNSSSYQSIELFDQSDGGANALNINSLRLLLNSAQSEKNRLTQMQMPESEELEVSQAFVERLIEESLSKLEEEEPSLDNFIRWELGACWIQHLQDHNNIEKDKKPLLDKAKNEMKVEGLGKPFKALKNNKNKSDLSSVKLSSENSKSHQACVYGEPESASVPSVESKHETATAENELVLKGLLSGAAFTRLKDSGTGLHCKVADFGSLELSPVDGRTLTDFMHTRGLRMRSLGHVVKLSEKFSHVQSLCIIEMIVRAFKHILQAVIAVIDKEKMATSIAAALNLLLGVPENRESDKSCKIHPLVWKWLEVFLRKRFDWDLSSLNYSDVRKFAILRGLCHKVLEVGIEIVPRDLDMDSPIPFHKSDIVSLVPVHKQAAYSSADGRQLLESSKTALDKGKLEDAVTYGTKALSRLVAVCGPYNRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEGYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAAGNGTQKPDTSIASKGHLSVSDLLDYISPSHDPKGRDIAVRRRSQITKMRMESCQNIGSTSSDESWKETPRETSGEVIVIPGPSVDVDTELETNSAPDSEQRILEKTSHGKQVSVELLSEAHADGEDGWQPVQRPRSSGSYGQRLKQRRATIGKAYYQKKNVESSVDYPYAKSSDQNSRYYIFKKRTISHGVYADDNTVNMSQVTKFGRKVVKAVTYRVKSMSASEKITVRDPSEIGDRLINSYSQHGSVSAPNDNGTVKTSIVSIGKSPSYKEVAVAPPGTISKLQVYNTQSDILGFGVGKHEEEDFKVRANSNPTLEEVKNTLKEKDKNSLSNSLHGSNHTNDSERKQTQFTDSVQDNLESDKRVESVDVEVHEAVDNIIMIDAVDDPVDSHNLEVNTSNTGCFEFSNHSTTISQEGEELRVSVSPSSQVDSPGISCKKLSASAAPFNPAPGIARTAPVTVNTALPSASGAVPQIGPPWPVNMNVLHGPATMLPAATQMCSSPHHAYPSPPPKPNMIQPLPFMYPPYTQPRSIPTNNFPVTSSAFHVNQFTWQCNMNPTVSNFGPNVVWPGCHAVEFPVPAPSIKPISDPILEPQRQCHVSKNSSSAFVLPDGITNVSGYKKELQPLESETNEDEVGGVHTESVKENGNPNFNGFENAGDKPNNNIGLNNISRSEKNIDGEKTLSILIRGRRNRKQTLRMPISLLTRPNSSQSFKVVYNRVVRGSDVPKSINLSSRRDCTATA 1804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00577 1804 MobiDBLite consensus disorder prediction 1183 1204 - -
Spst6g00577 1804 Coils Coil 471 491 - -
Spst6g00577 1804 MobiDBLite consensus disorder prediction 1688 1725 - -
Spst6g00577 1804 Pfam Mitochondrial function, CLU-N-term 36 106 IPR028275 -
Spst6g00577 1804 SUPERFAMILY Hypothetical protein c14orf129, hspc210 180 241 IPR023231 -
Spst6g00577 1804 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3 10 1431 IPR027523 GO:0006996
Spst6g00577 1804 Pfam Translation initiation factor eIF3 subunit 135 657 799 IPR033646 -
Spst6g00577 1804 ProSiteProfiles Clueless (Clu) domain profile. 276 551 IPR025697 -
Spst6g00577 1804 SUPERFAMILY TPR-like 837 1025 IPR011990 GO:0005515
Spst6g00577 1804 ProSiteProfiles TPR repeat profile. 872 905 IPR019734 GO:0005515
Spst6g00577 1804 MobiDBLite consensus disorder prediction 1112 1133 - -
Spst6g00577 1804 Pfam Tetratricopeptide repeat 871 941 - -
Spst6g00577 1804 Pfam Tetratricopeptide repeat 955 1029 - -
Spst6g00577 1804 MobiDBLite consensus disorder prediction 1688 1702 - -
Spst6g00577 1804 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 827 1077 - -
Spst6g00577 1804 Gene3D Tetratricopeptide repeat domain 831 945 IPR011990 GO:0005515
Spst6g00577 1804 Gene3D Tetratricopeptide repeat domain 946 1073 IPR011990 GO:0005515
Spst6g00577 1804 CDD CLU-central 659 802 IPR033646 -
Spst6g00577 1804 SMART tpr_5 872 905 IPR019734 GO:0005515
Spst6g00577 1804 SMART tpr_5 956 989 IPR019734 GO:0005515
Spst6g00577 1804 SMART tpr_5 914 947 IPR019734 GO:0005515
Spst6g00577 1804 MobiDBLite consensus disorder prediction 1705 1725 - -
Spst6g00577 1804 MobiDBLite consensus disorder prediction 1384 1427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00577 Spst-Chr6 5248661 5262754 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00577 K03255 - gmx:100784117 2420.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00577 6 5248661 5262754 Spst4g01969 4 60347718 60364719 PCT