Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01969 ATGGCACCAAGAAACAGTCGCGGAAAGACCAAGGGTGAGAAGAAAAAGAAGGAAGAAAAGGTTCTTCCTGTTGTCATAGACATTACAGTGAAGCTTCTCGATGAAACTCATGTTCTTAAGGGAATATCAACAGACAGAATAATAGATGTTCGTCGACTCCTATCGGTGAATTCAGATACGTGTTATGTCACCAATTTTTCTCTATCTCATGAGGTAAGAGGGTCACATCTGAAGGATACAGTGGATGTGTCCGCACTGAAGCCCTGCCTGATCACTTTAGTTGAAGATGACTACGATGAAGAAGGAGCAGTGACGCACGTCCGAAGACTCCTTGACATTGTTGCATGTACCACAAACTTCGGTCCGTCGCTGTCTCCTCCAACAAAGGACGCCACCGGCACCGTCACAAAGTCCGATGTGCCACCGGTGAAAGATGCAGCAGGGATGATAGTGGCAGACGTGGACAATGAAATAAGCCACTCGTGCCCTAAGCTGGAGAACTTCTATGAATTTTTTTCTCTCTCGCACCTCACTGCACCAATCCAATATGTGAAGAAAGTTTCGAGACGGCGCGTGGAGGAGATATCGGACACGGATTATCTGTTCTCGCTGGATGTGAAAGTGTGCAACGGTAAAGTGGTGCATGTTGAGAGTTGCAGAAAAGGGTTCTACAGCGTTGGGAAGCAGCGAATTCTGTGTCATAATCTTGTTGATTTATTGAGACAACTTAGCAGAGCTTTTGATAAGCTCGTTAAATATGAAGCTTTCGATGATCTCTTGAAGGCTTTTTCTGAACGTAACAAGTTTGGGAATCTCCCTTATGGCTTCAGATCCAACACATGGCTTGTTCCTCCTGTTGCTGCACAATCACCCTCATCTTTTCCTCCTCTTCCCGTGGAGGATGAAACATGGGGAGGGAATGGTGGTAGTCTTGGAAAAGACGGAAAGTATGATTTGATTCCTTGGGCCAATGAGTTTTCATTTATTGCGTCTATGCCTTGCAAGACAGCAGAAGAAAGACAAGTTCGTGATAGAAAAGCATTTCTTCTGCACAGCCTGTTTGTTGATGTTTCTATTTTTAGAGCAATAAGAGCTGTTAAACATGTTATGGAAGAACCCAGTTTTAGTTGCTCTGTTGTAGAAAATAATATTATTTACACTGAGAGAATAGGTGACTTGAGTATCAAAGTCTTGAAAAATGGTTCTCTTGCAAGCTGTAAGATAGATACTAAAATTGATGGAGTCGAAGCTACCGGAGTAAGTCCAAAGGATCTACTAGAACGAAATCTACTGAAAGGAATCACTGCTGATGAAAATACTGCTGCCCATGATATTACCACTTTAGGTGTCGTTAATGTAAGGTACTGTGGTTATGTGGTCGTTGTGAAAGTTGTAGGTAGAGTTAATGAAAATGTTGACTCTCAATCTCAACAAATTATTGAATTGTCTGATCAGCCAGAGGGAGGTGCCAATGCACTCAATATTAACAGTCTGAGATTACTTCTTCACAACACAACTCCACCAGAAAACAGTAAACCAATAATTCAGATACAAACGTTCGAGAGTGAAGAGCCTGGTGCTTCCCATTGTTTTGTGGAGAAGGTGATTAAAGAAAGTCTTGCCAAGCTCGAGGAAGAAGAACCTGGTACGGACTACTTTGTAAGATGGGAACTTGGAGCTTGCTGGATGCAACATTTGCAAGACCAAAATAATAATACAGAAAAAGATAAGAAACCATCCTTGGAGAAGGCTAAGAATGAAATGAAGGTCGAGGGTCTTGGAAAACCCCTTAAAGCCCTAAAGAATTATAAAAAGAAATCTGATTCAAGCAATACTAATTCTGCATCTGAATATCCAAAATTTAGTCGGGAGGCTGAAACCCTTCCATTGCCCTCAATTGAATCCCAGCATGATACTACAGAAGCTGAGAATGAGCTTGTTCTGAAAAGGATGTTATCTGAGGAAGCTTTTACCCGATTTAAAGAATCAGGAACTGGACTTCACTGCAAGGTAAGCCTCATAGACGTAGCTCTCCCAAAATTGGTAGCAGATTTTGGCTCATTAGAACTCTCACCAGTTGATGGACGCACTCTAACTGATTTTATGCATACTAGGGGTCTACGAATGCGTTCTCTTGGGCATGTTGTCAAACTTTCAGAAAAGCTTTCACATGTGCAATCACTTTGTATTCATGAGATGATAGTTCGAGCTTTTAAGCACATCCTGCGTGCAGTAATTTCTTCTGTTGACAAGGAGAAAATGGCTTCATCAATTGCTGGTGCTTTGAATTTGCTGCTGGGTGTTCCTGGAAATAGAGAATCAGATAAATCACATGAAGTTCATCCCTTGGTGTGGAAATGGCTAGAGGTGTTTCTGAAAAAGCGATTTGATTGGGATCTGAACAGGTTGAACTACAAAGATGTGAGGAAATTTGCAATTTTACGTGGCTTGTGCCACAAGGTGGGAATTGAGCTGGTTCCTAGGGATTTTGATATGGATTCTCCAATTCCCTTCCAGAAATCTGATATTGTCAGCTTGGTCCCTGTTCACAAGCAAGCTGCGTGCTCATCTGCAGATGGAAGGCAGCTCTTAGAGTCATCCAAAACTGCTTTAGACAAGGGAAAGCTTGAGGACGCTGTTACCTATGGCACAAAGGCTCTTGCTAAGCTAGTAGCAGTTTGCGGTCCCTACCATCGAATGACAGCAGGAGCATACAGCCTCCTTGCTGTAGTTTTATATCATACTGGAGACTTCAATCAGGCTACAATATATCAACAAAAAGCTTTGGATATCAATGAGAGAGAGTTAGGTCTGGATCATCCTGATACCATGAAGAGCTATGGGGATCTTGCTGTTTTCTATTACAGACTACAACACACAGAGCTGGCTCTGAAGTATGTGAAGCGTGCTTTATATCTTCTGCATCTAACATGTGGCCCATCTCATCCAAACACTGCTGCTACTTACATTAATGTGGCTATGATGGAAGAAGGTCTGGGAAATGTACATGTCGCTCTCAGATATCTTCACAAAGCTTTAAAGTGCAACCAAAGATTACTTGGCGCAGACCACATTCAGACAGCTGCAAGTTATCATGCAATAGCAATAGCACTCTCACTGATGGAAGCATATCCATTGAGCGTGCAGCATGAGCAAACAACTTTGCAAATTCTGAGGGCAAAACTTGGTCCTGATGACTTGCGCACACAGGATGCCGCAGCTTGGCTGGAGTATTTTGAGTCCAAGGCTTTTGAACAGCAAGAAGCTGCTCGAAATGGTACTCGAAAACCTGATGCATCAATAGCTAGCAAAGGCCATTTGAGTGTGTCAGATTTGCTTGACTACATTAATCCTAATCATGATACTAAAGGGAGAGATGCAACATCAAAGAGAAGAAGCCAGATAACAAAGGTGAGAGCGACATCCTACTTTAACCTTGGCATGTCAAGTTCTGATGAGTCTTCAAAAGAAATTCCAAAAGAGACTTCAGATGAAGAGGTACAAAAACCAGTAGCAGAAGGTAGTGCAGATTCTGAGCAGGAAAGCAACTCTGGACCTGATTCAGAACATACTATTTTAAAACAAATATCAGATGAAAAGCCACAAATTTTTGATGGAATCTTGTCTGAAGCACATGCTGAAGGAGAGGATGGATGGCAACCAGTTCAAAGACCAAGATCAACTGGCTCATATGGCCGGAGACTGAAGCAGAGACGGGCAACACTTGGCAAAGTTTATAGTTACCAAAAGAATGTGGAAGTTGGCATGGAATCTCCTTTTGTAAGGAATACTAGTCCAAATAGTAGGTATTATTTCCTGAAGAAGCGGACAATTTCCCATGGGGGCTATACAGATGATCATACAGTAAATATCACCCAAGGCCCTAAATTTGGAAGGAAAGTTGTTAAAGCTGTTGCATACAGGGTCAAATCTACACCCTCAACTTCCAAGACTAGTGCAAATGAGACGTTAGAAACTGCTGACAAGCTGTTTACTTCTCGTTCAGAACCTGATGCAATTGATGTTAATCCAGTTAAGAATTGTATAGTTAGTCTTGGAAAGTCTCCTTCATACAAGGAAGTGGCCATAGCTCCTCCAGGGACAATCTCCAAGTTGCAGGTCTATAATCCTTCAAGTGAGATTTCTGTTAGCTGTGAACATGATGGTGGCAAACATGAAGAGGAAGATATTGAAGTTAATAGGAATGTTAATCCAACCCCGGCAGAGGCAATTGATATGAATAAAGAGAAGAATATTAATTCGTTTTCAGATTCTGTTGATGATTCACAGGATGATACTGGAGTTACTGCTGAGGGGAAAGAGGAAACTGAGTTGATTGTTGCTGCGCAAGATAATTGTACTAGTGCTGATGAGCAATCAGGAGACGTTGAAGCTCAAGGAGTAACCGATAATAGGATATTGATTCACGAAATAGATGATCATGTGGATTCTTCCAAACAAGAACTTGATGCAAGTAATTCATCTGGCAGTTTGGAACCTAGTTATAATACAAATCCCACTTCCCAAGGTGGTGAAAATTTAAGGGTCAATGTGTCATCATCAAATCAGAGTCATGCTGGTGGCGTTCCTAATAAGAAATTGTCTGCATCTGCAGCTCCCTTCAACCCATCACCTGCCATTGCACGTGCTCCACCAATTGCTATGAATATGGCTCTTCCTTCTGGTCCTAGTGCAATTCCTGCTATTGGCCCCTGGCCAGTAAACATGAATGTTCATCCTGGACCTACTACTGTGCTACCTGCAGTTACCCCGATGTGCTCCTCTCCTCACCATGCATATCCATCGCCTCCAACTACACCAAACATGATACAACCACTGCCATTTATGTATCCTCCTTATACTCAACCTCAATCAGTACCACCTAGCAACTTTCCGGTCACTAGCAGTGCCTTTCATTCCAATCATTATACATGGCAATGTAATTTGAACCCCACAATATCTAAGTTTGGTCCCGGTGCTGTTTGGCCTGGTTGTCATCCTGTAGAATTTCCTCTTCCGGTACCTATTGTTGAACCAATCCCTGACCCCCTTTCCGAGTCACAAGTTCTGTGTCATGGTTCTGAAAGTCCAAGTTCAGCTTCGGTTCTTCCTGAGGACATTGATAATATTGGTGATTCTAATCAATTGATAAAAACTTTAGTATCAGACACAAGTGAGGATGAAGCAGTGAGAGCTGGTTCAGAAAGCATAAAAGAAAACGGTGATATGGGTTTACATGGGACTGAAAACTCTGGGAACAAGCAAAATCAAAACATTGGTTCAAATGAGAACTCTAGCAGTAGTGAAGCAAACATGGATGGGGAGAAAACCTTCAGCATTTTAATTCGAGGGAGAAGAAATAGAAAGCAGACTTTGAGAATGCCAATAAGTTTGCTTACTCGACCTAATGGGTCACAGTCATTTAAGGTTATTTATAACCGTGTAGTTAGAGGAAGTCATGCTGCCAAGTCTATCAATCTCTCGCCAAATAAAGATTGTACTGCTACTGCTTAA 5514 0.4206 MAPRNSRGKTKGEKKKKEEKVLPVVIDITVKLLDETHVLKGISTDRIIDVRRLLSVNSDTCYVTNFSLSHEVRGSHLKDTVDVSALKPCLITLVEDDYDEEGAVTHVRRLLDIVACTTNFGPSLSPPTKDATGTVTKSDVPPVKDAAGMIVADVDNEISHSCPKLENFYEFFSLSHLTAPIQYVKKVSRRRVEEISDTDYLFSLDVKVCNGKVVHVESCRKGFYSVGKQRILCHNLVDLLRQLSRAFDKLVKYEAFDDLLKAFSERNKFGNLPYGFRSNTWLVPPVAAQSPSSFPPLPVEDETWGGNGGSLGKDGKYDLIPWANEFSFIASMPCKTAEERQVRDRKAFLLHSLFVDVSIFRAIRAVKHVMEEPSFSCSVVENNIIYTERIGDLSIKVLKNGSLASCKIDTKIDGVEATGVSPKDLLERNLLKGITADENTAAHDITTLGVVNVRYCGYVVVVKVVGRVNENVDSQSQQIIELSDQPEGGANALNINSLRLLLHNTTPPENSKPIIQIQTFESEEPGASHCFVEKVIKESLAKLEEEEPGTDYFVRWELGACWMQHLQDQNNNTEKDKKPSLEKAKNEMKVEGLGKPLKALKNYKKKSDSSNTNSASEYPKFSREAETLPLPSIESQHDTTEAENELVLKRMLSEEAFTRFKESGTGLHCKVSLIDVALPKLVADFGSLELSPVDGRTLTDFMHTRGLRMRSLGHVVKLSEKLSHVQSLCIHEMIVRAFKHILRAVISSVDKEKMASSIAGALNLLLGVPGNRESDKSHEVHPLVWKWLEVFLKKRFDWDLNRLNYKDVRKFAILRGLCHKVGIELVPRDFDMDSPIPFQKSDIVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGADHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPNHDTKGRDATSKRRSQITKVRATSYFNLGMSSSDESSKEIPKETSDEEVQKPVAEGSADSEQESNSGPDSEHTILKQISDEKPQIFDGILSEAHAEGEDGWQPVQRPRSTGSYGRRLKQRRATLGKVYSYQKNVEVGMESPFVRNTSPNSRYYFLKKRTISHGGYTDDHTVNITQGPKFGRKVVKAVAYRVKSTPSTSKTSANETLETADKLFTSRSEPDAIDVNPVKNCIVSLGKSPSYKEVAIAPPGTISKLQVYNPSSEISVSCEHDGGKHEEEDIEVNRNVNPTPAEAIDMNKEKNINSFSDSVDDSQDDTGVTAEGKEETELIVAAQDNCTSADEQSGDVEAQGVTDNRILIHEIDDHVDSSKQELDASNSSGSLEPSYNTNPTSQGGENLRVNVSSSNQSHAGGVPNKKLSASAAPFNPSPAIARAPPIAMNMALPSGPSAIPAIGPWPVNMNVHPGPTTVLPAVTPMCSSPHHAYPSPPTTPNMIQPLPFMYPPYTQPQSVPPSNFPVTSSAFHSNHYTWQCNLNPTISKFGPGAVWPGCHPVEFPLPVPIVEPIPDPLSESQVLCHGSESPSSASVLPEDIDNIGDSNQLIKTLVSDTSEDEAVRAGSESIKENGDMGLHGTENSGNKQNQNIGSNENSSSSEANMDGEKTFSILIRGRRNRKQTLRMPISLLTRPNGSQSFKVIYNRVVRGSHAAKSINLSPNKDCTATA 1837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01969 1837 MobiDBLite consensus disorder prediction 1154 1172 - -
Spst4g01969 1837 MobiDBLite consensus disorder prediction 601 623 - -
Spst4g01969 1837 SUPERFAMILY TPR-like 939 1066 IPR011990 GO:0005515
Spst4g01969 1837 MobiDBLite consensus disorder prediction 1175 1189 - -
Spst4g01969 1837 CDD CLU-central 692 832 IPR033646 -
Spst4g01969 1837 ProSiteProfiles Clueless (Clu) domain profile. 300 577 IPR025697 -
Spst4g01969 1837 MobiDBLite consensus disorder prediction 1746 1773 - -
Spst4g01969 1837 MobiDBLite consensus disorder prediction 1118 1133 - -
Spst4g01969 1837 Pfam Tetratricopeptide repeat 985 1059 - -
Spst4g01969 1837 Pfam Tetratricopeptide repeat 901 971 - -
Spst4g01969 1837 MobiDBLite consensus disorder prediction 606 620 - -
Spst4g01969 1837 Gene3D Tetratricopeptide repeat domain 861 974 IPR011990 GO:0005515
Spst4g01969 1837 Gene3D Tetratricopeptide repeat domain 975 1111 IPR011990 GO:0005515
Spst4g01969 1837 MobiDBLite consensus disorder prediction 1721 1773 - -
Spst4g01969 1837 ProSiteProfiles TPR repeat profile. 902 935 IPR019734 GO:0005515
Spst4g01969 1837 SMART tpr_5 902 935 IPR019734 GO:0005515
Spst4g01969 1837 SMART tpr_5 944 977 IPR019734 GO:0005515
Spst4g01969 1837 SMART tpr_5 986 1019 IPR019734 GO:0005515
Spst4g01969 1837 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3 10 1432 IPR027523 GO:0006996
Spst4g01969 1837 MobiDBLite consensus disorder prediction 569 589 - -
Spst4g01969 1837 MobiDBLite consensus disorder prediction 1212 1233 - -
Spst4g01969 1837 MobiDBLite consensus disorder prediction 1480 1537 - -
Spst4g01969 1837 MobiDBLite consensus disorder prediction 1488 1530 - -
Spst4g01969 1837 Pfam Translation initiation factor eIF3 subunit 135 690 831 IPR033646 -
Spst4g01969 1837 MobiDBLite consensus disorder prediction 570 589 - -
Spst4g01969 1837 MobiDBLite consensus disorder prediction 1115 1189 - -
Spst4g01969 1837 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 857 1107 - -
Spst4g01969 1837 SUPERFAMILY TPR-like 868 973 IPR011990 GO:0005515
Spst4g01969 1837 MobiDBLite consensus disorder prediction 1134 1153 - -
Spst4g01969 1837 Pfam Mitochondrial function, CLU-N-term 44 114 IPR028275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01969 Spst-Chr4 60347718 60364719 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01969 K03255 - gmx:100808136 3076.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01969 4 60347718 60364719 Spst4g01969 4 60347718 60364719 ECH
Spst6g00577 6 5248661 5262754 Spst4g01969 4 60347718 60364719 PCT